BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0083.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312093|ref|YP_003776185.1| hypothetical protein Hsero_2782...   289   1e-79

>gi|300312093|ref|YP_003776185.1| hypothetical protein Hsero_2782
           [Herbaspirillum seropedicae SmR1]
          Length = 601

 Score =  289 bits (739), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/189 (74%), Positives = 164/189 (86%)

Query: 1   MKLKRIHCSLVTRLVLFGLLLIVGSALLRYHILIGFLEKEQAQVAADQQSTIASYLAEDI 60
           MK+KR  CSLVTRLVLFGL+LI  SA+LRYHILIGFLEKEQAQVAADQQS IASYLA+DI
Sbjct: 41  MKIKRFDCSLVTRLVLFGLMLIGISAVLRYHILIGFLEKEQAQVAADQQSIIASYLAQDI 100

Query: 61  GYRVQERARYLERLARHMPSPMLDDRAAIRAWLQDHQELQPLFAQGLFVADANGLIVVDY 120
           GYRVQER RYLERLA H+P+  L+D  A++AWL++HQELQPLFAQG+FVA ANG I+VDY
Sbjct: 101 GYRVQERVRYLERLALHLPADRLEDGHAMQAWLREHQELQPLFAQGMFVAAANGQILVDY 160

Query: 121 PTLNGRRALSLTQYTDFERVLQGATVICPPLVSPASGKPIIAMLTPLRNAQGQIVGVLGG 180
           PTLNGRRALSL  Y DF+RVLQGATVICPPL+SPA+G+PI+A+LTP+R+A G++VG+LGG
Sbjct: 161 PTLNGRRALSLADYPDFKRVLQGATVICPPLLSPATGRPIMAVLTPVRDAHGRVVGILGG 220

Query: 181 EHRTQCPGL 189
                  G 
Sbjct: 221 STELTAAGF 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 573,165
Number of extensions: 23628
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)