BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0077.p (238 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transpo... 444 e-126 gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp... 195 2e-51 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 174 7e-45 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 139 2e-34 gi|300311701|ref|YP_003775793.1| export system ATP-binding subun... 136 1e-33 >gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 444 bits (1141), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/228 (95%), Positives = 224/228 (98%) Query: 4 NDPIKNRQAVLSSRGLGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLL 63 NDP+KNRQAVL++RGLGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLL Sbjct: 2 NDPLKNRQAVLAARGLGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLL 61 Query: 64 GGLDTPSTGTVSLLGKDFASLGESERGTLRNQSLGFVYQFHHLLPEFSALDNVAMPLMIR 123 GGLDTPS+GTVSLLGKDFASLGESERG LRNQSLGFVYQFHHLLPEFSALDNVAMPLMIR Sbjct: 62 GGLDTPSSGTVSLLGKDFASLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIR 121 Query: 124 RVKRAEAQEQAREMLEKVGLAQRVTHVPGELSGGERQRVALARALVTRPACVLADEPTGN 183 RVKRA+AQEQAREML KVGLAQRVTHVPGELSGGERQRVALARALVT PACVLADEPTGN Sbjct: 122 RVKRADAQEQAREMLGKVGLAQRVTHVPGELSGGERQRVALARALVTHPACVLADEPTGN 181 Query: 184 LDRSTADRTFELMIELSRTLGTAFVIVTHDIELAGRCARVLRLSDQGL 231 LDRSTADRTFELMIELSRTLGTAFVIVTHDIELAGRC RVLRLS+QGL Sbjct: 182 LDRSTADRTFELMIELSRTLGTAFVIVTHDIELAGRCGRVLRLSEQGL 229 >gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 195 bits (496), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 105/198 (53%), Positives = 134/198 (67%), Gaps = 2/198 (1%) Query: 30 VKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSTGTVSLLGKDFASLGESER 89 + +L +D V G +AIVGASGSGKSTLL LL GLDTPS G+V L G+D +L E R Sbjct: 34 LTILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGR 93 Query: 90 GTLRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRAEAQEQAREMLEKVGLAQRVTH 149 LR + LGFV+Q LL +AL+NV +PL +R A A+E+A EML +VGL R+ H Sbjct: 94 ALLRKRKLGFVFQSFQLLGHLNALENVMLPLELR--GDARAREKATEMLGRVGLGSRLKH 151 Query: 150 VPGELSGGERQRVALARALVTRPACVLADEPTGNLDRSTADRTFELMIELSRTLGTAFVI 209 P LSGGE+QRVALARA VT P +LADEPTG+LD +T + ELM EL+R G+ V+ Sbjct: 152 SPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMFELNRERGSTLVL 211 Query: 210 VTHDIELAGRCARVLRLS 227 VTHD +A RC R + ++ Sbjct: 212 VTHDNAMAARCQRTITIA 229 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 174 bits (440), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 140/219 (63%), Gaps = 1/219 (0%) Query: 10 RQAVLSSRGLGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTP 69 R +L RGL + F G + VL +V++D++ GE VAIVGASGSGKSTL+++LG LD P Sbjct: 2 RTPLLQLRGLRRDFPAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKP 61 Query: 70 STGTVSLLGKDFASLGESERGTLRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRAE 129 S G+ + G++ L E LR + GF++Q +HLL + A NV +P + ++ + Sbjct: 62 SAGSYLVAGRETGKLDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQ 121 Query: 130 AQEQAREMLEKVGLAQRVTHVPGELSGGERQRVALARALVTRPACVLADEPTGNLDRSTA 189 +++A E+L ++GLA+R H PG+LSGG++QRV++ARAL+ +LADEPTG LD + Sbjct: 122 RRQRAGELLARLGLAERSHHKPGQLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSG 181 Query: 190 DRTFELMIELSRTLGTAFVIVTHDIELAGRCARVLRLSD 228 +++ EL G +IVTHD+++A R++ + D Sbjct: 182 QEVIKILKEL-HAEGHTIIIVTHDMQVASHAQRIIEIKD 219 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 139 bits (350), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/214 (34%), Positives = 126/214 (58%), Gaps = 1/214 (0%) Query: 17 RGLGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSTGTVSL 76 RG+GKT+ V+ L ++D+++ G I+G SG+GKS+LL + L+ P++G V + Sbjct: 42 RGVGKTYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEV 101 Query: 77 LGKDFASLGESERGTLRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRAEAQEQARE 136 D A+L E++ LR + +G ++Q +LL + DN+A+PL + V RA+ ++ E Sbjct: 102 DDVDLATLDETQLVALRRR-IGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHE 160 Query: 137 MLEKVGLAQRVTHVPGELSGGERQRVALARALVTRPACVLADEPTGNLDRSTADRTFELM 196 +L VGL + P LSGG++QRV +ARAL + P +L DE T LD T +L+ Sbjct: 161 LLALVGLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLL 220 Query: 197 IELSRTLGTAFVIVTHDIELAGRCARVLRLSDQG 230 +++R LG +++TH++ + A + + +QG Sbjct: 221 RDINRKLGITIILITHEMSVIREIADRVLVLEQG 254 >gi|300311701|ref|YP_003775793.1| export system ATP-binding subunit [Herbaspirillum seropedicae SmR1] Length = 240 Score = 136 bits (343), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 79/218 (36%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 11 QAVLSSRGLGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPS 70 AV++ R L K F QG V + + + GE + IVG SGSGK+T L ++ G+ P Sbjct: 13 DAVVADR-LVKYFGQGNARVLAIDHACLSAAFGEILFIVGPSGSGKTTFLSIISGILRPD 71 Query: 71 TGTVSLLGKDFASLGESERGTLRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRAEA 130 G V + G D +L E + R ++GFV+Q +HL P ++ +NVA+PL+++ V A Sbjct: 72 GGVVRVNGVDLWNLPEDQLADFRLNTIGFVFQDYHLFPRLTSAENVAIPLILKNVDWKSA 131 Query: 131 QEQAREMLEKVGLAQRVTHVPGELSGGERQRVALARALVTRPACVLADEPTGNLDRSTAD 190 A L+ VGL P +LSGGE+QRVA+ARA+V+ P ++ DEPT +LD T Sbjct: 132 LASANMFLDVVGLKGCGDVFPLKLSGGEQQRVAIARAIVSSPPILILDEPTASLDGDTGR 191 Query: 191 RTFELMIELSRTLGTAFVIVTHDIELAGRCARVLRLSD 228 + E +IVTHD ++ R++ ++D Sbjct: 192 MIIAFLREKILNPRRCILIVTHDPRISEFADRIVHMAD 229 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 718,033 Number of extensions: 30282 Number of successful extensions: 483 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 305 Number of HSP's successfully gapped: 144 Length of query: 238 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 156 Effective length of database: 1,231,600 Effective search space: 192129600 Effective search space used: 192129600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)