BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0076.p (353 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum serop... 654 0.0 gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [He... 270 2e-73 gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desucc... 78 9e-16 gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspir... 74 2e-14 >gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum seropedicae SmR1] Length = 395 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/324 (95%), Positives = 322/324 (99%) Query: 1 MNTRQWLETLVAFDTTSRNSNLELITTVRDSLEKQGISSWLAHNKEQTKANLFATLPATA 60 MNTRQWLETLVAFDTTSRNSNLELITTVRDSL++QG++SWLAHNK++TKANLFATLPATA Sbjct: 6 MNTRQWLETLVAFDTTSRNSNLELITTVRDSLQQQGVASWLAHNKDKTKANLFATLPATA 65 Query: 61 GPNAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGSLFGRGTCDMKGFIATSLALV 120 GP+AGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDG+L+ RG+CDMKGFIAT+LALV Sbjct: 66 GPHAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSCDMKGFIATALALV 125 Query: 121 PEFLAMPRVKPIHLAFSYDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKG 180 PE+LAMPRVKPIHLAFS+DEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKG Sbjct: 126 PEYLAMPRVKPIHLAFSFDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKG 185 Query: 181 INVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTMT 240 INVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTMT Sbjct: 186 INVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTMT 245 Query: 241 TNQIRGGIAVNTIPELCEFTYEFRNLPGMSAADIQAQIDKYIAEVLLPKMRSEFPDARVE 300 TNQIRGGIAVNTIPELCEFTYEFRNLPGMS ADIQAQIDKYIAEVLLPKMR+EFPDARVE Sbjct: 246 TNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFPDARVE 305 Query: 301 IDNFAGSPALEAVEQAAITELVRA 324 IDNFAGSPALEAVEQAAITELVRA Sbjct: 306 IDNFAGSPALEAVEQAAITELVRA 329 >gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 270 bits (689), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 140/311 (45%), Positives = 188/311 (60%), Gaps = 8/311 (2%) Query: 3 TRQWLE---TLVAFDTTSRNSNLELITTVRDSLEKQGISSWLAHNKEQTKANLFATLPAT 59 TRQ L+ TL+ F+T SR SNL LI VRD LE+ G + L ++ E+ KANLFATL Sbjct: 13 TRQTLDILTTLIGFNTVSRESNLGLIEWVRDHLERHGAVTRLTYDAERRKANLFATLG-- 70 Query: 60 AGPNAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGSLFGRGTCDMKGFIATSLAL 119 +AG G V SGHTDVVPV GQKWDTDPF DG LFGRG CDMKGFIA +A Sbjct: 71 ---DAGPGRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGFIAICMAR 127 Query: 120 VPEFLAMPRVKPIHLAFSYDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHK 179 +P P+H +FSYDEE+GC+G +L ++ + I+ G ++GEPT M V+AHK Sbjct: 128 LPAIDLARLHTPLHFSFSYDEEVGCLGVRELLADLQQNDIRPTGVIIGEPTMMQPVIAHK 187 Query: 180 GINVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTM 239 G + C VHG +AHSS G N+I+ AA + IR+ A + +G D FDVP+S++ Sbjct: 188 GKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRVRHSGVQDDDFDVPYSSI 247 Query: 240 TTNQIRGGIAVNTIPELCEFTYEFRNLPGMSAADIQAQIDKYIAEVLLPKMRSEFPDARV 299 T GG A N IP+ EF +E R LPG+ A++ ++ Y + +LP+MR + R+ Sbjct: 248 ATTLTSGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEILPQMRIDGVQGRI 307 Query: 300 EIDNFAGSPAL 310 E + P + Sbjct: 308 EFETLTSYPGM 318 >gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desuccinylase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 78.2 bits (191), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 94/209 (44%), Gaps = 15/209 (7%) Query: 65 GSTEGGIVLSGHTDVVPVDG-QKWDTDPFKLTEKDGSLFGRGTCDMKGFIATSLALVPEF 123 G+ + +V +GHTDVVP +KW + PF+ T ++G L+GRG DMK IA + EF Sbjct: 57 GTAQPLVVFAGHTDVVPTGPLEKWQSHPFQPTLREGRLYGRGASDMKTSIAAMVVACEEF 116 Query: 124 LAM-PRVK-PIHLAFSYDEEIGCI-GAPVMLEEIVKRGIKVDGCVVGEPTSMNVV----- 175 A P K I + DEE I G V+ + RG ++D C+VGEPTS + Sbjct: 117 TAAHPDHKGSIGFLITSDEEGPAIDGTVVVCNALKARGEQLDYCIVGEPTSAKTLGDMIK 176 Query: 176 VAHKGINVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVP 235 +G V G H + N I AA + + A+ + A Y +P Sbjct: 177 NGRRGTMSGKLTVKGIQGHIAYPQLARNPIHQAAPALAEL--VAEQWDAGNEY----YLP 230 Query: 236 FSTMTTNQIRGGIAVNTIPELCEFTYEFR 264 S +N G A N IP + FR Sbjct: 231 TSWQISNIHGGTGASNVIPGEVMIDFNFR 259 >gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspirillum seropedicae SmR1] Length = 414 Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 14/230 (6%) Query: 71 IVLSGHTDVVPVDGQKWDTDPFKLTEKDGSLFGRGTC----DMKGFIATSLALVPEFLAM 126 + L+ H DVVP G+ W DP+ DG ++GR D ++ + AL E + Sbjct: 92 LALNAHGDVVP-PGEGWTHDPYGGEIADGRIYGRAAAVSKSDFASYLFATRAL--EAVGA 148 Query: 127 PRVKPIHLAFSYDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKGINVFAC 186 + L F+YDEE G + P L E ++ + D V+ S NVV AH F Sbjct: 149 SLRGGVELHFTYDEEFGGLLGPGWLLE--QKLTRPD-YVLAAGFSYNVVTAHNACLQFEI 205 Query: 187 KVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTMTTNQIRG 246 VHG++ H S+ G +A++ A ++ AI G K + TM +I G Sbjct: 206 TVHGRATHGSMPETGHDALQAATAILNAIYGALPGLKEI--RSAIPGITHPTMIVGRIDG 263 Query: 247 GIAVNTIPELCEFTYEFRNLPGMSAADIQAQIDKYIAEVL--LPKMRSEF 294 G N +P + R +P + ++A + K I + + LP +R E Sbjct: 264 GTNTNVVPGKVVLKMDRRMIPEEDPSQVEAGVRKLIEDAVAGLPGIRVEI 313 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,131,152 Number of extensions: 47752 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 4 Length of query: 353 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 267 Effective length of database: 1,212,660 Effective search space: 323780220 Effective search space used: 323780220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)