BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0074.p
         (837 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312085|ref|YP_003776177.1| transporter DNA uptake transmem...  1399   0.0  

>gi|300312085|ref|YP_003776177.1| transporter DNA uptake
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 829

 Score = 1399 bits (3621), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 713/834 (85%), Positives = 768/834 (92%), Gaps = 8/834 (0%)

Query: 1   MRALIIGFAIGVGLLQVQGQLPGTEWVAVGLVLALLLGLTAWKFWQPWLRVPLLLTCGAW 60
           MR+LIIGFAIG+GLLQ+Q QLPG EW  VGLVLA LLG TAWKFWQP+LRVPLLLTCGAW
Sbjct: 1   MRSLIIGFAIGIGLLQMQAQLPGLEWYGVGLVLAALLGFTAWKFWQPFLRVPLLLTCGAW 60

Query: 61  LGFLWAASFALYYLDQELPKAWEGRDITVIGTVADLPAHTEQGVRFRFDVEQVVVQGGVK 120
           LGFLWAA FA YYLDQELP AWEG DITVIGTVADLP H+ QG+R+RFDVEQVV+QGGVK
Sbjct: 61  LGFLWAAGFAAYYLDQELPAAWEGHDITVIGTVADLPDHSAQGLRWRFDVEQVVLQGGVK 120

Query: 121 PPVPPRLALSWYGNQRYQQPSEDGEQAAPPRMAVPDLRPGERWRLQVRLKRPHGNANPDG 180
           PPVPPRLALSWYGNQRYQ P+EDGEQAAP R+A+PD+RPGERWRL+VRLKRPHGNANP G
Sbjct: 121 PPVPPRLALSWYGNQRYQSPAEDGEQAAPARLALPDMRPGERWRLKVRLKRPHGNANPGG 180

Query: 181 FDYELWLLQDDVRATGYVVGRPAASGAALTALNRRVDDFVWTPSHMIDSARGWLRDRIYS 240
           FDYELWLLQDDVRATGYVVG PAA GA  TA+NRR++ FVWTPSH ID ARGWLRD IY+
Sbjct: 181 FDYELWLLQDDVRATGYVVGAPAAPGAPATAINRRLEAFVWTPSHAIDYARGWLRDGIYA 240

Query: 241 ALPGAPYAGVIAALVMGDQRGINQADWTVFNRTGIGHLMAISGLHITMLAALCGGLASWL 300
           ALPGAPYAGVIAALV+GDQRGI+QADW++FNRTGIGHLMAISGLHITMLAAL GGLASWL
Sbjct: 241 ALPGAPYAGVIAALVIGDQRGISQADWSIFNRTGIGHLMAISGLHITMLAALFGGLASWL 300

Query: 301 WRRSFFTGAQLPLRLPAQKVAVIVGMGAAFIYVLLAGFGVPAQRTLYMLIVVGIAFWRGR 360
           WRRSFFTGAQLPLRLPAQKVAV+ GM AA +YVLL+GFGVPAQRTLYMLIVVGIAFWRGR
Sbjct: 301 WRRSFFTGAQLPLRLPAQKVAVLAGMAAALLYVLLSGFGVPAQRTLYMLIVVGIAFWRGR 360

Query: 361 IVRVSVVQCLALGLVLLLDPWAVLWPGFWLSFSAVALLLYGSVGRMQPPQAMAAAASHKH 420
           IVRVS+V  LALGLVLLLDPWA+LWPGFWLSF AV LLLYGSVGRMQPP+AMAAAAS KH
Sbjct: 361 IVRVSLVMSLALGLVLLLDPWALLWPGFWLSFGAVGLLLYGSVGRMQPPRAMAAAASRKH 420

Query: 421 WWSALLQRIKQAGYAQYVVTLGLVPLTVLLFGQYSLVSPIANAVAIPLVSLVITPLALLG 480
           WW AL+QR+K+A +AQY+VTLGLVPLTVLLFGQYSL+ PIANAVAIPLVSLVITPLALLG
Sbjct: 421 WWPALVQRLKEASHAQYLVTLGLVPLTVLLFGQYSLIGPIANAVAIPLVSLVITPLALLG 480

Query: 481 SILPAVLAQFVLQVPHQLLVWLAEFLQGLNAMPWAVWQTPLPSTWMFALALGGTLLVLAP 540
           S+LP VLAQFVLQ+PH LL WLA FLQGL+AMPWAVWQTP+PS WMFALA+GGT+L+LAP
Sbjct: 481 SVLPTVLAQFVLQLPHALLAWLAGFLQGLSAMPWAVWQTPVPSWWMFALAMGGTMLLLAP 540

Query: 541 RGWPVRWLGLFGWLPLLLNAPVAPAEGSMRVTAFDVGQGMAVLVETPGHRLLYDTGPYYT 600
           RGWPVRWLG FGWLPLLLNAP+APAEGSMRVTAFDVGQGMAVLVETP HRLLYDTGPYYT
Sbjct: 541 RGWPVRWLGWFGWLPLLLNAPMAPAEGSMRVTAFDVGQGMAVLVETPTHRLLYDTGPYYT 600

Query: 601 AESDGATRVILPYLRARGIDHLDRVVISHNDNDHSGGAVSLFRHLPVDSVYSSLSPDSPI 660
            ESDGATRVILPYLRARGIDHLDRVVISHNDNDHSGGA+SLF  LPVDSVYSSL+ DSPI
Sbjct: 601 PESDGATRVILPYLRARGIDHLDRVVISHNDNDHSGGALSLFGSLPVDSVYSSLAEDSPI 660

Query: 661 LRAAPEHTRCQAGQSWNWDGIGFTVLHPVXTLCSHPDAASYDSDKWRPNARSCVLKVQIG 720
           LRAAP HTRCQAGQ+WNWDGIGF++LHP         AASYDSDKWRPNARSCVLKVQIG
Sbjct: 661 LRAAPLHTRCQAGQTWNWDGIGFSMLHPT--------AASYDSDKWRPNARSCVLKVQIG 712

Query: 721 RQSVLLAGDIEAVQEDELVSGPLADRLPSTVLLAPHHGSGTSSTEPFLRAVRPELAVFQV 780
           RQSVLLAGDIEAVQEDELV+GP+ +RLP+TVLLAPHHGS TSSTEPFLRAVRPELA+FQV
Sbjct: 713 RQSVLLAGDIEAVQEDELVNGPMGERLPATVLLAPHHGSATSSTEPFLRAVRPELAIFQV 772

Query: 781 GYRNRFNHPKPEVYERYGRLGIRRLRTDETGALTMTLGDQLQVEQYRKQHARYW 834
           GYRNRF HP P+V  RY RLGIRRLRTDE+GA+TM LGDQLQVEQYR+Q  RYW
Sbjct: 773 GYRNRFRHPHPDVDARYQRLGIRRLRTDESGAVTMVLGDQLQVEQYRQQRRRYW 826


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,607,861
Number of extensions: 109895
Number of successful extensions: 497
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 496
Number of HSP's successfully gapped: 1
Length of query: 837
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 744
Effective length of database: 1,179,515
Effective search space: 877559160
Effective search space used: 877559160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 135 (56.6 bits)