BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0072.p
         (556 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312083|ref|YP_003776175.1| CTP synthase [Herbaspirillum se...  1138   0.0  

>gi|300312083|ref|YP_003776175.1| CTP synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 556

 Score = 1138 bits (2944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/556 (98%), Positives = 554/556 (99%)

Query: 1   MTKFVFVTGGVVSSLGKGIAAASLAAILESRGLKVTLLKLDPYINVDPGTMSPLQHGEVF 60
           MTKFVFVTGGVVSSLGKGIAAASLAAILESRGLKVTLLKLDPYINVDPGTMSPLQHGEVF
Sbjct: 1   MTKFVFVTGGVVSSLGKGIAAASLAAILESRGLKVTLLKLDPYINVDPGTMSPLQHGEVF 60

Query: 61  VTDDGAETDLDLGHYERFISAKMKKVNNFTTGQVYESVIRKERRGEYLGKTVQVIPHITN 120
           VTDDGAETDLDLGHYERFISAKMKKVNNFTTGQVYESVIRKERRGEYLGKTVQVIPHITN
Sbjct: 61  VTDDGAETDLDLGHYERFISAKMKKVNNFTTGQVYESVIRKERRGEYLGKTVQVIPHITN 120

Query: 121 EIQEFIHRGAEGFEVALVEIGGTVGDIESLPFLEAARQLSLRSGRNATAFVHLTLVPFLA 180
           EIQEFIHRGAEGFEVALVEIGGTVGDIESLPFLEAARQLSLRSGRNATAFVHLTLVPFLA
Sbjct: 121 EIQEFIHRGAEGFEVALVEIGGTVGDIESLPFLEAARQLSLRSGRNATAFVHLTLVPFLA 180

Query: 181 SAGELKTKPTQHSVQKLREIGISPDALLCRADRRIPDDERDKISLFSNVAADAVISVWDA 240
           SAGELKTKPTQHSVQKLREIGI PDALLCRADRRIPDDERDKISLFSNVAADAVISVWDA
Sbjct: 181 SAGELKTKPTQHSVQKLREIGILPDALLCRADRRIPDDERDKISLFSNVAADAVISVWDA 240

Query: 241 DSIYKIPQMLHDQGLDTIICEKLGLSPKPADLSMWDKLIDAQNNPSHEVTIGMVGKYVDL 300
           DSIYKIPQMLHDQGLDTIICEKLGLSPKPADLS+WDKLIDAQNNPSHEVTIGMVGKYVDL
Sbjct: 241 DSIYKIPQMLHDQGLDTIICEKLGLSPKPADLSIWDKLIDAQNNPSHEVTIGMVGKYVDL 300

Query: 301 TESYKSLTEALRHAGIHTGSRVNIEYLDSEEIEANGTDSLNKYDAILVPGGFGKRGVEGK 360
           TESYKSLTEALRHAGIHTGSRVNIEYLDSEEIEANGTDSL+KYDAILVPGGFGKRGVEGK
Sbjct: 301 TESYKSLTEALRHAGIHTGSRVNIEYLDSEEIEANGTDSLDKYDAILVPGGFGKRGVEGK 360

Query: 361 IAAARYARENKVPYLGICLGMQVALLEYARNKAGLSKANSTEFDPDTEQPVVALIDEWQN 420
           IAAARYARENKVPYLGICLGMQVALLEYARNKAGLSKANSTEFDPDTEQPVVALIDEWQN
Sbjct: 361 IAAARYARENKVPYLGICLGMQVALLEYARNKAGLSKANSTEFDPDTEQPVVALIDEWQN 420

Query: 421 HDGKVERRDANSDLGGTMRLGAQTCAVKPGTLAAEIYGDSVTERHRHRYEANNFYLTRVE 480
           HDGKVERRDANSDLGGTMRLGAQTCAVKPGTLAAEIYGDSVTERHRHRYEANNFYL+RVE
Sbjct: 421 HDGKVERRDANSDLGGTMRLGAQTCAVKPGTLAAEIYGDSVTERHRHRYEANNFYLSRVE 480

Query: 481 EAGMVVSARTPTEDLCEIMELPRTGENAHPFYIGVQYHPEFKSTPRDGHPLFISYIRAAL 540
           EAGMVVSARTPTEDLCEIMELPRTGENAHPFYIGVQYHPEFKSTPRDGHPLFISYIRAAL
Sbjct: 481 EAGMVVSARTPTEDLCEIMELPRTGENAHPFYIGVQYHPEFKSTPRDGHPLFISYIRAAL 540

Query: 541 AHHAELQQDAAAKGKA 556
           AHHA+ QQDAAAKGKA
Sbjct: 541 AHHAQAQQDAAAKGKA 556


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,758,556
Number of extensions: 76327
Number of successful extensions: 197
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 466
Effective length of database: 1,193,720
Effective search space: 556273520
Effective search space used: 556273520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)