BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0065.p (138 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312037|ref|YP_003776129.1| sensory transduction regulatory... 185 1e-48 gi|300311884|ref|YP_003775976.1| two component response regulato... 92 1e-20 gi|300313267|ref|YP_003777359.1| response regulator transcriptio... 89 2e-19 gi|300312512|ref|YP_003776604.1| sensory transduction regulatory... 77 4e-16 gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790... 72 1e-14 >gi|300312037|ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 140 Score = 185 bits (470), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 98/128 (76%), Positives = 111/128 (86%) Query: 1 MVDPSPESVELARFSLWRSKLECDFGWFEDAERAMESLFSPQAQHHPDTLPCLILLEPRL 60 MVDPSPESVELARF LWR+KL+C FGWFEDAE A +SLF+PQA+ HP LPCLILLEPRL Sbjct: 8 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILLEPRL 67 Query: 61 PRMEGLDLLHMLRSQPHTQALPVIMFATSYDETDATRSREAGANDYLVKPVDAREFMLLI 120 PRMEGL+LLHMLR+ HT+ALPV+MFATS D+ DA R+R AGANDYLVKPVDAR FM L+ Sbjct: 68 PRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMELV 127 Query: 121 NQTVNYWL 128 +QTV WL Sbjct: 128 SQTVRRWL 135 >gi|300311884|ref|YP_003775976.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 92.4 bits (228), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/139 (41%), Positives = 76/139 (54%), Gaps = 1/139 (0%) Query: 1 MVDPSPESVELARFSLWRSKLECDFGWFEDAERAMESLFSPQAQHHPDTLPCLILLEPRL 60 +VD SPE EL R +L KL WF DAE A E F + D P LILL+ L Sbjct: 10 LVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHPYLILLDLNL 69 Query: 61 PRMEGLDLLHMLRSQPHTQALPVIMFATSYDETDATRSREAGANDYLVKPVDAREFMLLI 120 P M G D L +++S T +PV+MF++S D+ D +S E GAN Y+VK D +EFM + Sbjct: 70 PLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPKEFMGTV 129 Query: 121 NQTVNYWL-QHPPVTTEPG 138 T YW ++ P E G Sbjct: 130 VDTGIYWRNRNRPARNEEG 148 >gi|300313267|ref|YP_003777359.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 188 Score = 88.6 bits (218), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 69/127 (54%), Gaps = 2/127 (1%) Query: 1 MVDPSPESVELARFSLWRSKLECDFGWFEDAERAMESLFSPQAQHHPDTLPCLILLEPRL 60 M+DPSPE+ ELARF+LWR+ L C F +D A L S + T P LILLE + Sbjct: 20 MIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCAT-PSLILLESDM 78 Query: 61 PRMEGLDLLHMLRSQPHTQALPVIMFATSYDETDATRSREAGANDYLVKPVDAREFMLLI 120 +GL+LL LR+ H PV++F S+D + +AGA YL KP+D + + Sbjct: 79 ECGDGLELLRELRASSHLAEAPVVVF-PSHDTEGEREALDAGATAYLPKPIDGERYARCV 137 Query: 121 NQTVNYW 127 + V W Sbjct: 138 VEMVERW 144 >gi|300312512|ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 77.4 bits (189), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 72/119 (60%), Gaps = 5/119 (4%) Query: 1 MVDPSPESVELARFSLWRSKLECDFGWFEDAERAMESLFSPQAQHHPDT--LPCLILLEP 58 M++ + E+VELARF+LWRS C W+++A+ A++ L +H D LP LILL+P Sbjct: 8 MIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLH---RHRLDDARLPDLILLDP 64 Query: 59 RLPRMEGLDLLHMLRSQPHTQALPVIMFATSYDETDATRSREAGANDYLVKPVDAREFM 117 + G+D + +++ T+++PV++F S + EAGA+ YL+KP A ++M Sbjct: 65 GMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAPQYM 123 >gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790 [Herbaspirillum seropedicae SmR1] Length = 144 Score = 72.0 bits (175), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 3/132 (2%) Query: 1 MVDPSPESVELARFSLWRSKLECDFGWFEDAERAMESLFSPQAQHHPDTLPCLILLEPRL 60 ++D +++E ARF+LWRS L C WF+DAE A SL + QA P LILL+PR Sbjct: 12 IIDADLDAIETARFALWRSHLSCRIEWFDDAELANASLLT-QALCQLRDQPTLILLDPRN 70 Query: 61 PR-MEGLDLLHMLRSQPHTQALPVIMFATSYDETDATRSREAGANDYLVKPVDAREFMLL 119 R EG +LL L P +P+++F S +D + + Y KP ++M L Sbjct: 71 FRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFA-AEQDNRIWYAAKPARPADYMEL 129 Query: 120 INQTVNYWLQHP 131 + + V L+ P Sbjct: 130 VTRCVQQRLKQP 141 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 444,679 Number of extensions: 16109 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 9 Length of query: 138 Length of database: 1,619,870 Length adjustment: 76 Effective length of query: 62 Effective length of database: 1,260,010 Effective search space: 78120620 Effective search space used: 78120620 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)