BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0064.p
         (360 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312036|ref|YP_003776128.1| hypothetical protein Hsero_2724...   629   0.0  

>gi|300312036|ref|YP_003776128.1| hypothetical protein Hsero_2724
           [Herbaspirillum seropedicae SmR1]
          Length = 370

 Score =  629 bits (1621), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/349 (85%), Positives = 321/349 (91%)

Query: 1   LVIGGGAPNSTLIAGALAAFLAEGVEFDVISASGAGVLMGLLATAPRDAAPQDALMQWAE 60
           LVIGGGAPNSTLIAGALAAFLAEG+EFDVISASGAGVLMGLL TAPRD  P++ALM+WAE
Sbjct: 12  LVIGGGAPNSTLIAGALAAFLAEGIEFDVISASGAGVLMGLLYTAPRDVGPREALMKWAE 71

Query: 61  VGVADSIYKLFPVNYKVFKKPGTQAENYRDAMLAQWQQMPGLAASPFAAMFNQHFANASA 120
           VGVADSIYKLFPVNYKVFKKPG QAE+YR++MLAQ QQ+PGL A  F  MF +HFA+ASA
Sbjct: 72  VGVADSIYKLFPVNYKVFKKPGAQAESYRESMLAQMQQLPGLGAHAFTDMFTRHFADASA 131

Query: 121 KWNDWMHLMMSALSPSDLHSGSLGLCAHLPFLEQSIDFSAVPQMRPEFYINAYNLDRHQM 180
           KWNDWMHL+MSALSPSDLHSGSLGLCAHLPFLEQSIDF+AVP MRPEFYINAYN+DRH+M
Sbjct: 132 KWNDWMHLLMSALSPSDLHSGSLGLCAHLPFLEQSIDFTAVPAMRPEFYINAYNIDRHRM 191

Query: 181 QIWNKDQITPAHVRASLSFPFLYAPTEIDGEHYIEGAALDTLNFTPFITDPATGVAPAGE 240
           QIWNKDQITPAHVRASLSFPFLYAPTEIDGEHYIEGAALDTLNFTPFI       APAG+
Sbjct: 192 QIWNKDQITPAHVRASLSFPFLYAPTEIDGEHYIEGAALDTLNFTPFIAGEDGSPAPAGD 251

Query: 241 VDTLVVLDILGEDRLIRKPRNLYDAWVRSIITPLVKISQTEQRLFELEHNRDPATGAPLR 300
           VDTLVVLDILGEDRLIRKPRNLYDAWVRSIITPLVKIS+ EQRLFELEHN D ATG P R
Sbjct: 252 VDTLVVLDILGEDRLIRKPRNLYDAWVRSIITPLVKISKAEQRLFELEHNTDAATGKPRR 311

Query: 301 QVLKVDLMAGVPQDHWPQVLDWSASNMQLLFGVGYRAGVDFCRQHGELL 349
           QVLKVDLM GVP+ HWPQVLDWS+SNMQLLF VGYRAGV FCR+HG++L
Sbjct: 312 QVLKVDLMEGVPESHWPQVLDWSSSNMQLLFDVGYRAGVAFCREHGDVL 360


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,283,309
Number of extensions: 57771
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,212,660
Effective search space: 332268840
Effective search space used: 332268840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)