BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0059.p
         (552 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312031|ref|YP_003776123.1| polyferredoxin protein [Herbasp...   839   0.0  
gi|300312030|ref|YP_003776122.1| alkylphosphonate uptake protein...   187   2e-48

>gi|300312031|ref|YP_003776123.1| polyferredoxin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 445

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/432 (95%), Positives = 424/432 (98%)

Query: 1   MRRHGAFIRGLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60
           MRRHGAFIR LQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV
Sbjct: 1   MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60

Query: 61  SMVLMGRVWCGVLCPEGALTEFASRHGRGRAIPKWVRWGGWPFVAFALTTVYGQMVSVYQ 120
           SMVLMGRVWCGVLCPEGALTEFAS+HGRGRAIP+WVRWGGWPFVAFALTT+YGQMVSVYQ
Sbjct: 61  SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120

Query: 121 YPKAVLLVLGGSTVGAMIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPVHYKVNEDAWR 180
           YPKAVLLVLGGSTVGA+IIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAP+HYKVNEDAWR
Sbjct: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180

Query: 181 ASYHPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALSFRPPAVEVVHFGKTQ 240
           ASYHPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIAL+FRPPAVEVV FGKT+
Sbjct: 181 ASYHPEHKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFGKTE 240

Query: 241 NNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIERDIMWPFGTQAPWWLLTN 300
           NNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLI+RDIMWPFGTQAPWWLLTN
Sbjct: 241 NNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWLLTN 300

Query: 301 YPQQSDVFTWLDGAMVVGYILATGLVLGTGVALMFGLATRLLGKWEWSRFNHLVQALIPL 360
           YPQQSDVFTWLDGAMVVGYILATGLVLG+GVALMF LATRLLGKW+W RFNHLVQALIPL
Sbjct: 301 YPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQALIPL 360

Query: 361 AGCGVFVGLSATTISLLRAEHWPVYWANDVRAALLSAMTLWSLWLCWKVVARHATHWVQQ 420
           AGCGVF+GLSATTISLLRAEH PVYWANDVRAALL+AMTLWSLWLCWKVVARHA HW QQ
Sbjct: 361 AGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHWAQQ 420

Query: 421 VLAMLPLIGGLA 432
            LAMLPL+GGLA
Sbjct: 421 CLAMLPLMGGLA 432


>gi|300312030|ref|YP_003776122.1| alkylphosphonate uptake protein
           [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  187 bits (475), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 103/112 (91%), Positives = 107/112 (95%), Gaps = 1/112 (0%)

Query: 442 MSTLPACPQCQSEFTYEDGSQFVCPECGHEWSAQAAPAEQA-RVWRDASGNVLQDGDTVT 500
           MSTLPACPQCQSE+TYEDG Q+VCPEC HEWSAQAAPA +  RVWRDASGNVLQDGDTVT
Sbjct: 1   MSTLPACPQCQSEYTYEDGGQYVCPECAHEWSAQAAPAAEQARVWRDASGNVLQDGDTVT 60

Query: 501 VIKDLKLKGGGGVVKMGTKVKNIRLVEGDHDIDCKIDGFGSMGLKTEFVRKA 552
           VIKDLKLKGGGGVVKMGTKVKNIRLV+GDHDIDCKIDGFGSMGLKTEFVRKA
Sbjct: 61  VIKDLKLKGGGGVVKMGTKVKNIRLVDGDHDIDCKIDGFGSMGLKTEFVRKA 112


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.141    0.488 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,804,004
Number of extensions: 78660
Number of successful extensions: 326
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 2
Length of query: 552
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 462
Effective length of database: 1,193,720
Effective search space: 551498640
Effective search space used: 551498640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)