BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0058.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312029|ref|YP_003776121.1| Na+-dependent transporter prote...   619   e-178
gi|300309858|ref|YP_003773950.1| Na+-dependent transporter prote...   268   6e-73

>gi|300312029|ref|YP_003776121.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score =  619 bits (1595), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 309/335 (92%), Positives = 325/335 (97%)

Query: 1   MARPRFLPDNMTLMLLAVVLTASFLPCTGQVAEAFDGLTTFMIGLLFFMHGAKLSREAVV 60
           MARPRFLPDNMTL+LLAVV+TAS LPCTGQVAE FDGLTTFMIGLLFFMHGAKLSREAVV
Sbjct: 1   MARPRFLPDNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVV 60

Query: 61  AGFTHWKLHVTVLLCTFALFPLIGLALKPVLLQFITPELYLGLLFLCVLPSTVQSSIAFT 120
           AGFTHWKLHVTVLLCTFALFPL+GLA KP+L  FITPELYLGLLFLCVLPSTVQSSIAFT
Sbjct: 61  AGFTHWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFT 120

Query: 121 SVARGNVPAAICAASASNLLGIFLTPLLVGVLVVAHDGGGHSSLDSILKIVYQLLLPFVA 180
           SVARGNVPAAICAASASNLLGIFLTPLLVG LVVAH+G GHSSLDSILKIVYQLLLPFVA
Sbjct: 121 SVARGNVPAAICAASASNLLGIFLTPLLVGALVVAHEGAGHSSLDSILKIVYQLLLPFVA 180

Query: 181 GQIARPFIGRWVERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPVSMLVALLVINA 240
           GQIARP+IGRW+ERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVP+SMLVALLVINA
Sbjct: 181 GQIARPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINA 240

Query: 241 VLLAIIMGLTTFGSRRLGFNKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 300
           VLLA+IM LTT+GSRRLGF+KEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM
Sbjct: 241 VLLALIMALTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 300

Query: 301 LFHQIQLMVCAVMAARYGARDEQVKAAVATESGGK 335
           LFHQ+QLMVCAV+AARYGAR E+V+AAVA+ESGG 
Sbjct: 301 LFHQLQLMVCAVLAARYGARQEEVEAAVASESGGD 335


>gi|300309858|ref|YP_003773950.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  268 bits (685), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 160/294 (54%), Positives = 210/294 (71%), Gaps = 2/294 (0%)

Query: 39  TTFMIGLLFFMHGAKLSREAVVAGFTHWKLHVTVLLCTFALFPLIGLALKPVLLQFITPE 98
           +   I LLFF+HGAKLSREA +AG    +LH+  L  TF LFPL+GL LK V    +TP+
Sbjct: 5   SNVAISLLFFLHGAKLSREAALAGLKQPRLHLLTLGSTFLLFPLLGLGLKAVAPDLLTPQ 64

Query: 99  LYLGLLFLCVLPSTVQSSIAFTSVARGNVPAAICAASASNLLGIFLTPLLVGVLVVAHDG 158
           L++G+LF+C L STVQSSI FTS+ARGNVPAAIC A+ASNLLGI +TPLLV +L+  H  
Sbjct: 65  LWMGVLFVCTLSSTVQSSIGFTSIARGNVPAAICGATASNLLGILVTPLLVTLLLHRHHE 124

Query: 159 GGHSSLDSILKIVYQLLLPFVAGQIARPFIGRWVERNKSWLKFVDQSSILLVVYVAFSEA 218
              + L  +L I+ QLLLPFV G + RP+IG W+ R+K  +  VD+  ILL VY AFS A
Sbjct: 125 A--NGLSQVLSILLQLLLPFVLGNLLRPWIGDWINRHKVIVNVVDRGGILLSVYAAFSAA 182

Query: 219 VVQGLWHQVPVSMLVALLVINAVLLAIIMGLTTFGSRRLGFNKEDEITIVFCGSKKSLAS 278
           V QG+WH  P   L  L+++NA+LL  ++ +TT+G+R L   + DEI +VFCGSKKSLAS
Sbjct: 183 VAQGIWHLFPPGQLALLVLVNAMLLGAVLLITTYGARALKMPRGDEIVLVFCGSKKSLAS 242

Query: 279 GVPMAKVLFSSGAIGMVLLPVMLFHQIQLMVCAVMAARYGARDEQVKAAVATES 332
           G+P+A VLF+     +VLLP+MLFHQ+QLM+CAV+A RY A+ + + A  A+  
Sbjct: 243 GIPIASVLFAGSGAAVVLLPIMLFHQMQLMLCAVLARRYAAQQDHLDADDASSQ 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.143    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,117,778
Number of extensions: 42456
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 3
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 131 (55.1 bits)