BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0056.p
         (423 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312027|ref|YP_003776119.1| major facilitator superfamily p...   620   e-179

>gi|300312027|ref|YP_003776119.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 423

 Score =  620 bits (1599), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 372/417 (89%), Positives = 386/417 (92%), Gaps = 6/417 (1%)

Query: 5   SPSIPPDEAAESLRHHTPFKLFWCASVASTIALQMQIVAVGWQVYQLTHSAFDLGIVGLV 64
           SP  PP      LRHHTPFKLFWCASVASTIALQMQIVAVGWQVYQLTHSA DLGIVGLV
Sbjct: 13  SPEPPPP-----LRHHTPFKLFWCASVASTIALQMQIVAVGWQVYQLTHSALDLGIVGLV 67

Query: 65  QFIPSLILVFVVGHVADRFDRRNVARVSSLVEAAAAATLALGSLHGWLSREMIFVIVAII 124
           QFIPSLILVFVVGHVADRFDRRNVARVS+LVEA AAATLA GSL GWL+RE+IFVIVA+I
Sbjct: 68  QFIPSLILVFVVGHVADRFDRRNVARVSALVEALAAATLAAGSLGGWLNREIIFVIVAVI 127

Query: 125 GAGRAFSKPTMSALLPSLMSPKALPGAVAGSASATQFAIIIGPALGGFLYVAGPAVVYAS 184
           GAGRAFSKPTMSALLPSLMSP+ LPGAVAGSASATQFAIIIGPALGGFLYVAGPAVVYAS
Sbjct: 128 GAGRAFSKPTMSALLPSLMSPRQLPGAVAGSASATQFAIIIGPALGGFLYVAGPAVVYAS 187

Query: 185 SCALFIACSVLLSLIRRPAQVTAAQAAPAKPTGASLSSVFAGLAFIRSKPAIFGAISLDM 244
           SC LF  CS+LL LIRRPAQ  A  AA    TGASLSSVFAGLAFIRSKPAIFGAISLDM
Sbjct: 188 SCVLFTLCSLLLWLIRRPAQAGAPAAAAKP-TGASLSSVFAGLAFIRSKPAIFGAISLDM 246

Query: 245 FAVLLGGATALLPVFANDILHTGAVGLGLLRSAPAAGALIVALLLARFPLGGRVGRTMFI 304
           FAVLLGGATALLPVFA+DILHTGA GLGLLRSAPAAGAL VAL LAR PLGGRVGRTMF+
Sbjct: 247 FAVLLGGATALLPVFAHDILHTGAAGLGLLRSAPAAGALAVALWLARRPLGGRVGRTMFV 306

Query: 305 AVAVFGLATIVFGLSRSFPLSLAALAVLGAADMISVVVRSSFVQLETPDAMRGRVSAVNS 364
           AV VFGLAT+VFGLSRSFPLSLAALAVLGAADMISVVVRSSFVQLETPDAMRGRVSAVNS
Sbjct: 307 AVGVFGLATMVFGLSRSFPLSLAALAVLGAADMISVVVRSSFVQLETPDAMRGRVSAVNS 366

Query: 365 VFIGTSNQLGEFESGLTAAWFGAVPAVLIGGIGTLLIVLLWMRLFPSLYQVDRLAAR 421
           VFIGTSNQLGEFESGLTAAWFGAVPAVLIGG+GTLLIVLLW+RLFP+LY+VDRL +R
Sbjct: 367 VFIGTSNQLGEFESGLTAAWFGAVPAVLIGGVGTLLIVLLWVRLFPALYRVDRLTSR 423


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,072,335
Number of extensions: 37313
Number of successful extensions: 273
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 2
Length of query: 423
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,203,190
Effective search space: 403068650
Effective search space used: 403068650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)