BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0050.p
         (241 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312020|ref|YP_003776112.1| D-galactose-1-dehydrogenase [He...   455   e-129

>gi|300312020|ref|YP_003776112.1| D-galactose-1-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  455 bits (1170), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/241 (89%), Positives = 228/241 (94%)

Query: 1   MPPQYRYEAAREALSAGKHVFLEKPPGATLSEVESLKNLAADKGVTLFASWHSRHAPAVQ 60
           MPPQYRYEAAREA+ AGKHVFLEKPPGATLSEVESL++LAA++GVTLFASWHSRHAPAVQ
Sbjct: 67  MPPQYRYEAAREAIRAGKHVFLEKPPGATLSEVESLRDLAAEQGVTLFASWHSRHAPAVQ 126

Query: 61  VVKRHLQEHAPRKVKVIWREDVRHWHPDQEWIWQPGGLGVFDPGINALSIVTEILPQAMF 120
           VVKRHLQ+HAPR+VKVIWREDVRHWHPDQEWIWQPGGLGVFDPGINALSIVTEILPQAMF
Sbjct: 127 VVKRHLQQHAPRQVKVIWREDVRHWHPDQEWIWQPGGLGVFDPGINALSIVTEILPQAMF 186

Query: 121 LKQATLEVPSNRQTPIAARLGFTDALGTDVQADFDWRQTGEQTWDIVIETDSTRVHLKKG 180
           LKQA LEVPSNRQTPIAARL FTDALGTDVQADFDWRQTG QTWDI+IET ST VHLKKG
Sbjct: 187 LKQAALEVPSNRQTPIAARLAFTDALGTDVQADFDWRQTGGQTWDIIIETGSTHVHLKKG 246

Query: 181 GHELWINDAPCELPVEGEYPSLYAYFCQLIRSGSSDVDVAPLRHVADAFMLGEHVVTDAF 240
           GHELWI+    ELPVEGEYPSLY +FCQLIR  +SDVDVAPLRHVADAFMLGEH+VTDAF
Sbjct: 247 GHELWIDGKQSELPVEGEYPSLYQHFCQLIRKHASDVDVAPLRHVADAFMLGEHIVTDAF 306

Query: 241 V 241
           V
Sbjct: 307 V 307


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 861,577
Number of extensions: 37155
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,226,865
Effective search space: 193844670
Effective search space used: 193844670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)