BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0044.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312015|ref|YP_003776107.1| NodT family protein [Herbaspiri...   125   1e-30
gi|300312564|ref|YP_003776656.1| outer membrane multidrug resist...    64   7e-12

>gi|300312015|ref|YP_003776107.1| NodT family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 495

 Score =  125 bits (315), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/85 (81%), Positives = 77/85 (90%)

Query: 30  AGCASFEGIGSDKQLAQARDFSTARSLSDPNPGAPNGQWPGSDWVRQFGDAQLTALIEDA 89
           +GCASF GIGSD+Q+AQA DF+T RSLSDPNPGAPNGQWPGSDWVRQFGDAQL AL+E A
Sbjct: 27  SGCASFAGIGSDRQVAQAGDFATQRSLSDPNPGAPNGQWPGSDWVRQFGDAQLVALVEQA 86

Query: 90  LAANPGLQQARARIGAAAALAESRG 114
           L ++P LQQARARI AA+ALAESRG
Sbjct: 87  LTSSPSLQQARARIAAASALAESRG 111


>gi|300312564|ref|YP_003776656.1| outer membrane multidrug
           resistance lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 515

 Score = 63.5 bits (153), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 16  ACAVLAALIGAIGLAGCASFEGIGSDKQLAQARDFSTARSLSDPNPGAPNGQWPGSDWVR 75
           A +VLAA++ A  +AGCASF  +G   Q      + + +SL+     A    WP   W R
Sbjct: 25  AVSVLAAVLAATLMAGCASFSDLGERAQPKSIDRYQSQQSLA---ASAVQAAWPSDQWWR 81

Query: 76  QFGDAQLTALIEDALAANPGLQQARARIGAAAALAESRG 114
            +GDAQL ALI++AL + P +  A+AR+  A   A+ +G
Sbjct: 82  VYGDAQLNALIDEALQSAPSMAVAKARLMKAEGAAQQQG 120


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 409,046
Number of extensions: 12851
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)