BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0043.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312014|ref|YP_003776106.1| transcription regulator protein...   330   4e-92
gi|300309619|ref|YP_003773711.1| transcription regulator protein...    60   2e-10

>gi|300312014|ref|YP_003776106.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 217

 Score =  330 bits (847), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 161/188 (85%), Positives = 175/188 (93%)

Query: 1   MVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNKDALIFALRERHSTRML 60
           MVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNKDALIFALRERH+TRML
Sbjct: 17  MVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNKDALIFALRERHATRML 76

Query: 61  TLFEDVVAHIDASGTLSGDFEKLINALVAAHLLEPELNRILEEEFPAFNLPVSQEIRQGF 120
            LFED VAHID +GTLS DF+++I+A+VAAHLLEPELNRILEEEFPA+NLPVS EIRQGF
Sbjct: 77  ALFEDAVAHIDDAGTLSSDFDQVISAVVAAHLLEPELNRILEEEFPAYNLPVSTEIRQGF 136

Query: 121 FDSIRRVLEKHRATITPPDLDVATFVVQRMLKALIKAVVLTGYGGVSPASVRTEILPAVI 180
           F++I RVLEKHR +IT PDLD+A FV+QRMLKALIKAVVLTG GGV P SVR+EILPAVI
Sbjct: 137 FEAIHRVLEKHRDSITTPDLDLAAFVLQRMLKALIKAVVLTGPGGVPPGSVRSEILPAVI 196

Query: 181 GYLTAPRS 188
           GYLT PRS
Sbjct: 197 GYLTLPRS 204


>gi|300309619|ref|YP_003773711.1| transcription regulator protein
          [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score = 59.7 bits (143), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 1  MVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNKDALIFALRE---RHST 57
          +V  IL+A  +VL+  G A+  T  VAE AG+SVGS+YQYFPNK A++F L+      +T
Sbjct: 23 LVKAILEAAVQVLLREGAARFTTARVAERAGVSVGSIYQYFPNKAAILFRLQSDEWEQTT 82

Query: 58 RML-TLFED 65
           M+  L ED
Sbjct: 83 EMVRVLLED 91


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 582,952
Number of extensions: 23081
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)