BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0038.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312011|ref|YP_003776103.1| hypothetical protein Hsero_2699...   261   4e-71

>gi|300312011|ref|YP_003776103.1| hypothetical protein Hsero_2699
           [Herbaspirillum seropedicae SmR1]
          Length = 341

 Score =  261 bits (666), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/151 (84%), Positives = 137/151 (90%), Gaps = 5/151 (3%)

Query: 15  PAADQDKT-----RWMPDLGKLTATGGVIQVEGAGGGGLTPWALITGYGTRDSYGANAHY 69
           PA+D+++      RWMPDL KLTATGGVIQVEGAGGGGLTPWALITGYG+RDSYGANAHY
Sbjct: 57  PASDRNERNDSNDRWMPDLAKLTATGGVIQVEGAGGGGLTPWALITGYGSRDSYGANAHY 116

Query: 70  TYLSTQDYTLKSYGVAVGILDRLELSLAKQEFYGSLAPLADLKITQDIVGIKLKLAGDAV 129
           TYL+TQDYTL+SYGVAVGILDRLELS+AKQEFYG  APL DLKITQDIVG+KLKLAGDAV
Sbjct: 117 TYLATQDYTLRSYGVAVGILDRLELSVAKQEFYGGAAPLNDLKITQDIVGVKLKLAGDAV 176

Query: 130 YDQDRWLPQIAVGAMFKHNNGIGGLGTVTSV 160
           YDQDRWLPQIA G MFK NNG+GGLG VTSV
Sbjct: 177 YDQDRWLPQIAAGVMFKRNNGVGGLGPVTSV 207


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 491,555
Number of extensions: 15667
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)