BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0021.p
         (554 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311995|ref|YP_003776087.1| malonate decarboxylase alpha su...  1089   0.0  

>gi|300311995|ref|YP_003776087.1| malonate decarboxylase alpha
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 555

 Score = 1089 bits (2816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/552 (96%), Positives = 539/552 (97%)

Query: 3   ARRTVNSGWRGPXTSVPRATAALGSQLQGKIAPADKLAELLYAVLENGDRVCVEGNNQKQ 62
           + R  N+  +     + RATA LGSQLQGKIAPADKLA+LLYAVLENGDRVCVEGNNQKQ
Sbjct: 4   SERVWNARQKNREQRLARATAVLGSQLQGKIAPADKLADLLYAVLENGDRVCVEGNNQKQ 63

Query: 63  ADFLAKGLAALDPARVNGLHMLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAKLAS 122
           ADFLAKGLAALDPARVNGLHMLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAKLAS
Sbjct: 64  ADFLAKGLAALDPARVNGLHMLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAKLAS 123

Query: 123 AGKLNIGAIHTYLELFGRYFVDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEATAFS 182
           AGKLNIGAIHTYLELFGRYFVDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEATAFS
Sbjct: 124 AGKLNIGAIHTYLELFGRYFVDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEATAFS 183

Query: 183 SGIVIAQVNEIVDELPRVDIPADWVSFAIKAPTPHYIEPLFTRDPAQISEIQVLMAMMAI 242
           SGIVIAQVNEIVDELPRVDIPADWV FAIKAPTPHYIEPLFTRDPAQISEIQVLMAMMAI
Sbjct: 184 SGIVIAQVNEIVDELPRVDIPADWVGFAIKAPTPHYIEPLFTRDPAQISEIQVLMAMMAI 243

Query: 243 KGIYAEYGVQRLNHGIGFDTAAIELILPTYAESLGLRGKICKHWALNPHPALIPAIEAGF 302
           KGIYAEYGVQRLNHGIGFDTAAIELILPTYAESLGLRGKICKHWALNPHPALIPAIEAGF
Sbjct: 244 KGIYAEYGVQRLNHGIGFDTAAIELILPTYAESLGLRGKICKHWALNPHPALIPAIEAGF 303

Query: 303 VESVHSFGSELGMEDYIRARPDVFFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQIDLQ 362
           VESVHSFGSELGMEDYIRARPD+FFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQIDLQ
Sbjct: 304 VESVHSFGSELGMEDYIRARPDIFFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQIDLQ 363

Query: 363 GNSSTATLGRIAGFGGAPNMGADARGRRHASEAWLKAGQQARAGRNTIPRGQKLVVQTVE 422
           GNSSTATLGRIAGFGGAPNMGADARGRRHASEAWLKAGQQARAGR+TIPRGQKLVVQTVE
Sbjct: 364 GNSSTATLGRIAGFGGAPNMGADARGRRHASEAWLKAGQQARAGRHTIPRGQKLVVQTVE 423

Query: 423 TFREHMQPAFVEKLDAWQLGEQAKMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQ 482
           TFREHMQPAFVE+LDAWQLGEQAKMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQ
Sbjct: 424 TFREHMQPAFVERLDAWQLGEQAKMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQ 483

Query: 483 AIRGVAGYTAVGMGRDKRMVENLRDRGIIRRAEDLGIDKRMATRDLLAAKNMKDLVRASG 542
           AIRGVAGYTAVGMGRD+RMVENLRDRGIIRRAEDLGIDKRMATRDLLAAKNMKDLVRASG
Sbjct: 484 AIRGVAGYTAVGMGRDRRMVENLRDRGIIRRAEDLGIDKRMATRDLLAAKNMKDLVRASG 543

Query: 543 GLYNPPKRFRNW 554
           GLYNPPKRFRNW
Sbjct: 544 GLYNPPKRFRNW 555


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,825,706
Number of extensions: 80761
Number of successful extensions: 267
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 464
Effective length of database: 1,193,720
Effective search space: 553886080
Effective search space used: 553886080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)