BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0018.p
         (242 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311992|ref|YP_003776084.1| phosphoribosyl-dephospho-CoA tr...   288   4e-79

>gi|300311992|ref|YP_003776084.1| phosphoribosyl-dephospho-CoA
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  288 bits (736), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 143/215 (66%), Positives = 174/215 (80%)

Query: 13  RHHLLWLSEAGWSRLLAGGCDARQQATLQHWQRMRWPLIVRRRDVEAKDEEICVGIALPP 72
           RHHLLWL+EA W+RL     D+R+QA L  W++MRWP++VRR + +A  +E+C GIALPP
Sbjct: 6   RHHLLWLTEAAWTRLQTQSQDSREQAVLARWRQMRWPVVVRRAEADAGADELCAGIALPP 65

Query: 73  DAQGNKPRIALRVRADEVASSRAPFLLRDIVAARLAGLPAAWQAGLAELQEHMERAGIAL 132
           DAQGNKPR+ALRV+  EVA+S AP+LLRDI AARL GLP  WQAG+  LQ+ M+ AGIAL
Sbjct: 66  DAQGNKPRLALRVQRAEVAASHAPYLLRDIAAARLHGLPQGWQAGMEALQQQMQAAGIAL 125

Query: 133 SVFGSLAWQAVTAQVYLRSSSDIDLLFQPRSQAQLEAGVRLLAWQAMFLPLDGEIVFPDG 192
           +VFGSL+WQA+TAQ Y+RSSSDIDLLF P SQAQL  G++LLA QA  LPLDGEIVFPDG
Sbjct: 126 AVFGSLSWQAITAQAYVRSSSDIDLLFAPDSQAQLAQGLQLLARQAAMLPLDGEIVFPDG 185

Query: 193 AAVSWKEWRQVAVLGSHPEGQVLVKRPASVALERV 227
           AAVSWKEW+QV    +  + +V+VKRPA+VALE V
Sbjct: 186 AAVSWKEWQQVMRKETKSDARVMVKRPAAVALEPV 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.132    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 862,628
Number of extensions: 37382
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,226,865
Effective search space: 195071535
Effective search space used: 195071535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)