BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0017.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311991|ref|YP_003776083.1| triphosphoribosyl-dephospho-CoA...   424   e-120

>gi|300311991|ref|YP_003776083.1| triphosphoribosyl-dephospho-CoA
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  424 bits (1090), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/306 (75%), Positives = 246/306 (80%), Gaps = 2/306 (0%)

Query: 1   MRRLMQHPDTLTPPLHHTQKRRAARENLAFCRQLARLAVRSLYQELVLYPKPGLVSRVDN 60
           MRRLM HP  L  PLH  Q+RRA R+NL FCRQLARLA+RSL+QELVLYPKPGLVS +DN
Sbjct: 1   MRRLMAHPALLAAPLHPLQQRRAVRQNLQFCRQLARLALRSLHQELVLYPKPGLVSLIDN 60

Query: 61  GSHTDMTAETFLRSLFALRHYFFQIAAAGLDGASFRTLQTLAIRAEERMLRATGGINTHR 120
           GSH DM A TFLRSLF+LRHYFFQIA AGL GA F  LQ LAI AE RMLRATGG+NTHR
Sbjct: 61  GSHDDMDASTFLRSLFSLRHYFFQIAVAGLKGAPFHHLQKLAIAAEARMLRATGGVNTHR 120

Query: 121 GAIFALGMLCAATGYARGRHMPLQPATIRATLLIQWGDALARHSAAAMP--CGQHSHGQR 178
           GAIFALGMLCAA  Y RGR +PLQ   IRATLLIQWGDALARHS   +    GQ SHGQ 
Sbjct: 121 GAIFALGMLCAAMAYCRGRKLPLQAEVIRATLLIQWGDALARHSGVHLDHGAGQRSHGQS 180

Query: 179 VAAEHAVGGAREEGALGFPAVFEVALPQLQATLEAGRDLYHARIDALFALMAHLSDTNVY 238
           VA  HAVGGAREEGALGFPAVFEVALPQLQ+TLE GR  + ARIDALFALMAH+SDTNVY
Sbjct: 181 VALAHAVGGAREEGALGFPAVFEVALPQLQSTLEQGRAPHEARIDALFALMAHISDTNVY 240

Query: 239 HRGGAEGAALVRSRSAAFLAAGGTALADWEARAQDCHREFVTRRLSPGGAADLLAAACLV 298
           HRGGAEGA  VR +SAAFLAAGGT    W  +A  CH +FV  RLSPGGAADLLAAACLV
Sbjct: 241 HRGGAEGAQRVRQQSAAFLAAGGTGAPGWRTQALACHHDFVAHRLSPGGAADLLAAACLV 300

Query: 299 HEVRNL 304
           H+   L
Sbjct: 301 HQAMAL 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 914,806
Number of extensions: 37026
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)