BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0012.p
         (429 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311005|ref|YP_003775097.1| 4-hydroxyphenylpyruvate dioxyge...   642   0.0  
gi|300313061|ref|YP_003777153.1| 4-hydroxyphenylpyruvate dioxyge...   136   3e-33

>gi|300311005|ref|YP_003775097.1| 4-hydroxyphenylpyruvate
           dioxygenase-like protein [Herbaspirillum seropedicae
           SmR1]
          Length = 364

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/361 (89%), Positives = 327/361 (90%), Gaps = 21/361 (5%)

Query: 1   MGHADTQFATAAANSPARASGDLFDNPMGTDGFEFVEYTAADPAGIAAVLELMGFTAVAR 60
           MGH +T FA AA       SGDLFDNPMGTDGFEFVEYTAADPA IA VLELMGFTAVAR
Sbjct: 1   MGHTETNFAPAA-------SGDLFDNPMGTDGFEFVEYTAADPAAIARVLELMGFTAVAR 53

Query: 61  TQNGN--------------GEPGSNAAAFAQVHGASVNAMAFRVKDAAHVYKRALELGAE 106
            ++ N              GEPGSNAAAFAQVHGASVNAMAFRVKDAA VYKRALELGAE
Sbjct: 54  HRSKNVTLYRQGQVNFILNGEPGSNAAAFAQVHGASVNAMAFRVKDAAQVYKRALELGAE 113

Query: 107 GVEAKLGPMELNIPAIRGIGGSLLYLVDRYGDNGSIYDVDFQFFPDVERNPKGVGLTYID 166
           GVEAKLGPMELNIPAIRGIGGSLLYLVDRYG+NGSIYDVDFQFFP VERNPKGVGLTYID
Sbjct: 114 GVEAKLGPMELNIPAIRGIGGSLLYLVDRYGENGSIYDVDFQFFPGVERNPKGVGLTYID 173

Query: 167 HLTHNVMRGAMDTWSSFYTRLFNFREIKYFDIEGKVTGLRSRAMTSPCGKIRIPINESAD 226
           HLTHNVMRGAMDTWSSFYTRLFNFREIKYFDIEGKVTGLRSRAMTSPCGKIRIPINESAD
Sbjct: 174 HLTHNVMRGAMDTWSSFYTRLFNFREIKYFDIEGKVTGLRSRAMTSPCGKIRIPINESAD 233

Query: 227 DKSQIEEFIKQYNGEGIQHIALGTDDIYQTVRALYARGVPLQDTIATYYDLVERRIPGHG 286
           DKSQIEEFIKQYNGEGIQHIALGTDDIYQTVRAL  RGVPLQDTI+TYYDLVERRIPGHG
Sbjct: 234 DKSQIEEFIKQYNGEGIQHIALGTDDIYQTVRALRERGVPLQDTISTYYDLVERRIPGHG 293

Query: 287 EDLAALRELKILIDGAPTDGQGLLLQIFTQNLIGPVFYEIIQRKGNDGFGEGNFKALFES 346
           EDL ALRELKILIDGAPT GQGLLLQIFTQNLIGPVFYEIIQRKGNDGFGEGNFKALFES
Sbjct: 294 EDLDALRELKILIDGAPTAGQGLLLQIFTQNLIGPVFYEIIQRKGNDGFGEGNFKALFES 353

Query: 347 I 347
           I
Sbjct: 354 I 354


>gi|300313061|ref|YP_003777153.1| 4-hydroxyphenylpyruvate
           dioxygenase [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score =  136 bits (343), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 128/263 (48%), Gaps = 33/263 (12%)

Query: 26  NPMGTDGFEFVEYTAADPAGIAAVLELMGFTAVARTQN----------GNGEPGSNAAAF 75
           NP+G DG EF+EY   +P  + AVLE MGF  V R ++           N    ++A A+
Sbjct: 13  NPLGIDGIEFIEYATTEPLALGAVLERMGFEQVGRHRSREVVLYTQGEMNVIVNADATAW 72

Query: 76  A----QVHGASVNAMAFRVKDAAHVYKRALELGAEGVEAKLGPMELNIPAIRGIGGSLLY 131
           A    +V   S++A+A RV+DA   Y+R  ELGA  +  + G MELNIP + G G S++Y
Sbjct: 73  AGFDHEVQATSLSAIALRVRDANEAYRRVTELGAWAIPTRAGAMELNIPGVHGCGDSIIY 132

Query: 132 LVDRYGDNGSIYDVDFQFFPDVERNPKGVGLTYIDHLTHNVMRGAMDTWSSFYTRLFNFR 191
            VDRY D  SIYDVDF+      R    +   +   L   V    +  W  FY+ L  F 
Sbjct: 133 FVDRYRDF-SIYDVDFKPASQERRQTSALAGLHFFGLVQAVQPDRLREWIDFYSTLMGFS 191

Query: 192 EIKYFDIEGKVTGL--RSRAMTSPCGKIRIPINE---SADDKSQIEEFIKQYNGEGIQHI 246
            +     EG+  G+  +   + SPC +  I + E     +D    EE ++         +
Sbjct: 192 VLP----EGQFFGILPKGSLLVSPCRQFYIQLVEPPAGTEDIHWEEELLR---------L 238

Query: 247 ALGTDDIYQTVRALYARGVPLQD 269
            LGT D+ Q VR L  RGV   D
Sbjct: 239 GLGTPDVLQAVRQLQERGVVFVD 261


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,226,189
Number of extensions: 54222
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 2
Length of query: 429
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 341
Effective length of database: 1,203,190
Effective search space: 410287790
Effective search space used: 410287790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)