BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0009.p
         (128 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311987|ref|YP_003776079.1| acyl-CoA thioester hydrolase [H...   253   3e-69
gi|300313155|ref|YP_003777247.1| acyl-CoA hydrolase [Herbaspiril...    65   1e-12

>gi|300311987|ref|YP_003776079.1| acyl-CoA thioester hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  253 bits (646), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 121/123 (98%), Positives = 123/123 (100%)

Query: 1   VAYACGSRYAGQYVVTLSVDQVMFRQPIHVGELVTFLASVNHTGKSSMEIGIKVVAENIR 60
           VAYACGSRYAGQYVVTLSVDQVMFRQPIHVGELVTFLASVNHTGKSSMEIGIKVVAENIR
Sbjct: 37  VAYACGSRYAGQYVVTLSVDQVMFRQPIHVGELVTFLASVNHTGKSSMEIGIKVVAENIR 96

Query: 61  TQETRHVNSCFFTMVAVDDQRKPIPVPPLRPFSQEEKRRFDAAVIRKSLRQELARRYEEV 120
           TQETRHVNSCFFTMVAVDDQRKPIPVPPLRPFSQEEKRRF+AAVIRKSLRQELARRY+EV
Sbjct: 97  TQETRHVNSCFFTMVAVDDQRKPIPVPPLRPFSQEEKRRFEAAVIRKSLRQELARRYDEV 156

Query: 121 KPG 123
           KPG
Sbjct: 157 KPG 159


>gi|300313155|ref|YP_003777247.1| acyl-CoA hydrolase [Herbaspirillum
           seropedicae SmR1]
          Length = 144

 Score = 65.5 bits (158), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 6   GSRYAGQYVVTLSVDQVMFRQPIHVGELVTFLASVNHTGKSSMEIGIKVVAENIRTQ-ET 64
            +R A   V T++V+  +F+ P+ VG+L++F A +   G +S+ + ++V AE  R Q E 
Sbjct: 48  ATRRANGRVATIAVNSFLFKNPVFVGDLLSFYADIVKVGNTSITVNVEVYAERNRLQTEI 107

Query: 65  RHVNSCFFTMVAVDDQRKPIPVPPLRP 91
             V     T VA D+ RKP P+PPL P
Sbjct: 108 VKVTEATLTYVATDENRKPRPLPPLDP 134


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 343,434
Number of extensions: 10955
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 128
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,264,745
Effective search space: 67031485
Effective search space used: 67031485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)