BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0005.p
         (217 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311009|ref|YP_003775101.1| DNA repair system specific for ...   347   5e-97

>gi|300311009|ref|YP_003775101.1| DNA repair system specific for
           alkylated DNA repair protein [Herbaspirillum seropedicae
           SmR1]
          Length = 217

 Score =  347 bits (889), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 177/217 (81%), Positives = 192/217 (88%)

Query: 1   VSGDLFAGLARDPSVETITEGALLLRAFVDEEEAAALMAAIDKVLAASPLRHMQTPGGFR 60
           ++GDLFAGL R P+VE ITEGALLLRAFVD  EAA LM  I  VLA SPLRHMQTPGGFR
Sbjct: 1   MTGDLFAGLERTPAVERITEGALLLRAFVDASEAAQLMRDIATVLAQSPLRHMQTPGGFR 60

Query: 61  MSVAMSNCGQFGWVTDRRGYRYQSLDPVAERDWPAMPEAFAALAARASAAAGFAGFDPDA 120
           MSVAMSNCGQ+GWVTDRRGYRYQSLDP++ERDWP MP +F ALA RA+ AAGFA F PDA
Sbjct: 61  MSVAMSNCGQYGWVTDRRGYRYQSLDPLSERDWPPMPASFLALAGRAAEAAGFAAFVPDA 120

Query: 121 CLINRYEPGARMSLHQDKNELDMDQPIVSVSLGLPATFLFGGMARTDKPQRMRLESGDVV 180
           CL+NRYEPGA+MSLHQD+NE+DM QPIVSVSLGLPATFLFGGM R+DK QRMRL+SGDVV
Sbjct: 121 CLVNRYEPGAKMSLHQDRNEIDMTQPIVSVSLGLPATFLFGGMERSDKAQRMRLDSGDVV 180

Query: 181 VWGGPARLAFHGVDPLRDGEHPLTGRCRYNLTFRRAR 217
           VWGGPARLAFHGVD +R  EHPLTG CRYNLTFRRAR
Sbjct: 181 VWGGPARLAFHGVDTVRQAEHPLTGACRYNLTFRRAR 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 653,935
Number of extensions: 25377
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 136
Effective length of database: 1,236,335
Effective search space: 168141560
Effective search space used: 168141560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)