BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0031.p
         (477 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310006|ref|YP_003774098.1| pyruvate kinase II protein [Her...   962   0.0  

>gi|300310006|ref|YP_003774098.1| pyruvate kinase II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score =  962 bits (2487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/477 (98%), Positives = 475/477 (99%)

Query: 1   MSRATKIVATIGPASSDRDTLTRMIRAGVDVVRLNFSHGKPQDHIDRATLVREVADECGK 60
           MSRATKIVATIGPASSDR+TLTRMIRAGVDVVRLNFSHGKPQDHIDRATLVREVADECGK
Sbjct: 1   MSRATKIVATIGPASSDRETLTRMIRAGVDVVRLNFSHGKPQDHIDRATLVREVADECGK 60

Query: 61  KVAIMADLQGPKIRVGKFENGKIMLANGDKFILDSDCQMGNQERVGLDYKALPRDLKGND 120
           KVAIMADLQGPKIRVGKFENGKIMLANGDKFILD+DCQMGNQERVGLDYKALPRDLKGND
Sbjct: 61  KVAIMADLQGPKIRVGKFENGKIMLANGDKFILDADCQMGNQERVGLDYKALPRDLKGND 120

Query: 121 ILLLNDGLIVLKVERVIGNEIHTVVKIGGELSNNKGINRQGGGLSAPALTAKDMDDIKTA 180
           +LLLNDGLIVLKVERV+GNEIHTVVKIGGELSNNKGINRQGGGLSAPALTAKDMDDIKTA
Sbjct: 121 VLLLNDGLIVLKVERVMGNEIHTVVKIGGELSNNKGINRQGGGLSAPALTAKDMDDIKTA 180

Query: 181 MSFQADYVAVSFPKNATDMEMARQLSNVAGEPFGHKPMMIAKIERAEAIPLLQEILDASD 240
           MSFQADYVAVSFPKNATDMEMARQLSNVAGEPFGHKPMMIAKIERAEAIPLLQEILDASD
Sbjct: 181 MSFQADYVAVSFPKNATDMEMARQLSNVAGEPFGHKPMMIAKIERAEAIPLLQEILDASD 240

Query: 241 GIMVARGDLAVEVGNAAVPGLQKRMIKMARASNKLTITATQMMESMIVNAVPTRAEVSDV 300
           GIMVARGDLAVEVGNAAVPGLQKRMIKMARASNKLTITATQMMESMIVNAVPTRAEVSDV
Sbjct: 241 GIMVARGDLAVEVGNAAVPGLQKRMIKMARASNKLTITATQMMESMIVNAVPTRAEVSDV 300

Query: 301 ANAVLDGTDAVMTSAETASGKYPVETVEAMSAICLEAERSENVQLDADFLNLRFTRVDQS 360
           ANAVLDGTDAVMTSAETASGKYPVETVEAM AICLEAERSENVQLDADFLNLRFTRVDQS
Sbjct: 301 ANAVLDGTDAVMTSAETASGKYPVETVEAMHAICLEAERSENVQLDADFLNLRFTRVDQS 360

Query: 361 IAYGALFTAHHLRVKAIAALTESGSTALWMSRHNIDIPIFAITPNVATRRKAALFRNVYT 420
           IAYGALFTAHHLRVKAIAALTESGSTALWMSRHNIDIPIFAITPNVATRRKAALFRNV+T
Sbjct: 361 IAYGALFTAHHLRVKAIAALTESGSTALWMSRHNIDIPIFAITPNVATRRKAALFRNVHT 420

Query: 421 LELAQAPDTEAMLKGAQDLLLAQGVVQKGDLIVVTWGEPIGQVGGTNALKILRVGEY 477
           LELAQ PDTEAMLKGAQDLLLAQGVVQKGDLIVVTWGEPIGQVGGTNALKILRVGEY
Sbjct: 421 LELAQCPDTEAMLKGAQDLLLAQGVVQKGDLIVVTWGEPIGQVGGTNALKILRVGEY 477


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,365,674
Number of extensions: 55224
Number of successful extensions: 203
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 388
Effective length of database: 1,198,455
Effective search space: 465000540
Effective search space used: 465000540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)