BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0028.p
         (197 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310003|ref|YP_003774095.1| branched-chain amino acid perme...   353   6e-99

>gi|300310003|ref|YP_003774095.1| branched-chain amino acid permease
           [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score =  353 bits (905), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 173/192 (90%), Positives = 183/192 (95%)

Query: 1   MSLLVYAGSAQFAALPLLAAGVPLLVVFFTAMIVNLRFVIFSAAVAPHFEHLPWYRRVWY 60
           MSLLVYAGSAQFA LPLLA G PLLVVFFTAMIVNLRF+IFSAAVAPHFEHLPWYRR+WY
Sbjct: 67  MSLLVYAGSAQFAVLPLLAVGTPLLVVFFTAMIVNLRFIIFSAAVAPHFEHLPWYRRIWY 126

Query: 61  GFFNGDISMAFFPQRYPPSTFHQPAGKIGYFAAICYPGWVAWQLGATIGILLGSQIPESW 120
           GFFNGDISMAFFPQR+PPSTF QPAGKIGYF+AICYPGW+AWQLGATIGILL SQIPESW
Sbjct: 127 GFFNGDISMAFFPQRFPPSTFGQPAGKIGYFSAICYPGWLAWQLGATIGILLASQIPESW 186

Query: 121 NIGFAGTLALIAVMIPMTSSLPALAGVVVSGTVAVLALDLPYRLGLLLAMVLGMAAAMLA 180
           NIGFAGTLALIA+MIPMTSSLPALAGVVVSGTVAVLAL+LPYRLGLLLAMVLGM+AAMLA
Sbjct: 187 NIGFAGTLALIAIMIPMTSSLPALAGVVVSGTVAVLALELPYRLGLLLAMVLGMSAAMLA 246

Query: 181 DKLLPGSGSDGD 192
           DKLLPG   + +
Sbjct: 247 DKLLPGKDEEEE 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 587,368
Number of extensions: 24174
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 117
Effective length of database: 1,241,070
Effective search space: 145205190
Effective search space used: 145205190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)