BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0022.p
         (201 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309998|ref|YP_003774090.1| hypothetical protein Hsero_0663...   260   6e-71

>gi|300309998|ref|YP_003774090.1| hypothetical protein Hsero_0663
           [Herbaspirillum seropedicae SmR1]
          Length = 194

 Score =  260 bits (664), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 129/191 (67%), Positives = 149/191 (78%), Gaps = 1/191 (0%)

Query: 9   MARWPNVPYCFGWLRLDARGQWRMRDERAQQLALPGDPIRHPALLAFIDRNYACDDSGRW 68
           MARWPNVP+CFGWLRLDARG WRMRDERAQQL LPGDPIRHPALLAFI+RNY  D++GRW
Sbjct: 1   MARWPNVPHCFGWLRLDARGGWRMRDERAQQLDLPGDPIRHPALLAFIERNYDSDETGRW 60

Query: 69  YFQNGPQRVYVDLEWVPHILRTQPGAETLVPSLLLHTQAAVEQLDAAWMDERGRLYLRSG 128
           YFQNGPQRVYVDLEW+P I RTQPG    +  L+LHT AA+  L+AAWMDE GRLYL++G
Sbjct: 61  YFQNGPQRVYVDLEWMPLIARTQPGLNEAL-QLVLHTGAALPALEAAWMDESGRLYLQAG 119

Query: 129 EIVAGVDDRDLATLLPCLHHAGQADEEALLRWLEGAEDLTLSFTWNGQDLPLQRIASDQL 188
               GVDDRDLA LLPCL    +ADE AL+ W+EG + ++L F  + Q +PLQRIA+  L
Sbjct: 120 GQFCGVDDRDLAQLLPCLQAGQRADEAALMAWMEGDDSVSLQFIHDAQAVPLQRIAAAAL 179

Query: 189 EQTFRFVCSPR 199
              F FV  PR
Sbjct: 180 ATRFGFVSLPR 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 733,297
Number of extensions: 32569
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,236,335
Effective search space: 148360200
Effective search space used: 148360200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)