BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0011.p
         (425 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314060|ref|YP_003778152.1| periplasmic beta-D-glucoside gl...   719   0.0  

>gi|300314060|ref|YP_003778152.1| periplasmic beta-D-glucoside
           glucohydrolase [Herbaspirillum seropedicae SmR1]
          Length = 784

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/357 (96%), Positives = 355/357 (99%)

Query: 1   MVLLENRNAALPLKKNARIALVGPLADSHIDMLGSWSAAGKDKQTITLRQGLQAAMGGQG 60
           MVLLENRNAALPLKKNARIALVGPLADSHIDMLGSWSAAGKDKQTITLRQGLQAA+GGQG
Sbjct: 411 MVLLENRNAALPLKKNARIALVGPLADSHIDMLGSWSAAGKDKQTITLRQGLQAALGGQG 470

Query: 61  KLVYARGANITEDKHIVDYLNFLNWDDPEVVQDKRSPKAMIDEAVKAARNAEVIVAAVGE 120
           KLVYARGANITEDKHIVDYLNFLNWDDPEVVQDKRSPKAMIDEAVKAAR+A+VIVAAVGE
Sbjct: 471 KLVYARGANITEDKHIVDYLNFLNWDDPEVVQDKRSPKAMIDEAVKAARHADVIVAAVGE 530

Query: 121 SRGMSHESSSRTSLSLPQSQLDLLKALKATGKPLVLVLMNGRPLDLNWARENASAILETW 180
           SRGMSHESSSRTSLSLPQSQLDLLKALKATGKPLVLVLMNGRPLDLNWARENASAILETW
Sbjct: 531 SRGMSHESSSRTSLSLPQSQLDLLKALKATGKPLVLVLMNGRPLDLNWARENASAILETW 590

Query: 181 YTGTEGGNAIADLLFGDVNPSGKLPITFPRSVGQIPSYYNHPRVGRPYTEGKPGNYTSQY 240
           YTGTEGGNAIAD+LFGDVNPSGKLPITFPRSVGQIPSYYNHPRVGRPYTEGKPGNYTSQY
Sbjct: 591 YTGTEGGNAIADILFGDVNPSGKLPITFPRSVGQIPSYYNHPRVGRPYTEGKPGNYTSQY 650

Query: 241 FDEPNGPLYPFGYGLSYTEFKLSEVRLSQPTMTADGKVQASVTVKNTGRRAGATVVQLYI 300
           FDEPNGPLYPFGYGLSYTEFKLSEV LSQP+M+ADGKV+ASVTVKN GRRAGATVVQLY+
Sbjct: 651 FDEPNGPLYPFGYGLSYTEFKLSEVSLSQPSMSADGKVEASVTVKNVGRRAGATVVQLYL 710

Query: 301 RDVAASVVRPVKELKDFRKVMLQPGEEKEVQFSIDRKALSFYNAKLEYVAEPGEFQV 357
           RDVAASVVRPVKELKDFRKVMLQPGEEK+VQFSIDRKALSFYNAKLEYVAEPGEFQV
Sbjct: 711 RDVAASVVRPVKELKDFRKVMLQPGEEKQVQFSIDRKALSFYNAKLEYVAEPGEFQV 767


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,309,110
Number of extensions: 55432
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 337
Effective length of database: 1,203,190
Effective search space: 405475030
Effective search space used: 405475030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)