BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0008.p (297 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 429 e-121 gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 191 9e-50 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 130 1e-31 gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 114 7e-27 gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 102 3e-23 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 429 bits (1103), Expect = e-121, Method: Compositional matrix adjust. Identities = 236/258 (91%), Positives = 247/258 (95%) Query: 40 YRPGRFTGWIVPLLFLLAVEAGARLDWIPARLLPPPSELAHTLWTLAQRGELLPHIAASL 99 YRPGRFTGWIVPL FLL VEAGARL+ IPARLLPPPSELAHTLW+LAQRGELLPHIAASL Sbjct: 21 YRPGRFTGWIVPLAFLLLVEAGARLELIPARLLPPPSELAHTLWSLAQRGELLPHIAASL 80 Query: 100 ARVASGFVIGSVLAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETP 159 ARVA+GFVIGS LAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETP Sbjct: 81 ARVAAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETP 140 Query: 160 KVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTSSGLSTGELIRHILLPASLPYLFAGLR 219 KVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGT+SGL+T LI HILLPASLPYLFAGLR Sbjct: 141 KVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGHILLPASLPYLFAGLR 200 Query: 220 GGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLSAILILALLGKVSDSLLRTVE 279 GGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVL+AILILALLGK+SD LLR VE Sbjct: 201 GGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLAAILILALLGKLSDGLLRAVE 260 Query: 280 QKSLGWRDARRRSHGKTA 297 QKSLGWR+ARR+S +T+ Sbjct: 261 QKSLGWREARRQSSQQTS 278 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 191 bits (484), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 118/270 (43%), Positives = 166/270 (61%), Gaps = 12/270 (4%) Query: 18 DAAKPPVARRGATAGAGSTCGGYRPGR-FTGWIVPLLFLLAVEAGARLDWIPARLLPPPS 76 + AKP AR+ ++P + GW++PLL L+ E A+ W+ +R+LP P Sbjct: 17 EQAKPKAARKS-----------FQPSHAWIGWLLPLLLLVWWEVAAQAGWLSSRILPEPL 65 Query: 77 ELAHTLWTLAQRGELLPHIAASLARVASGFVIGSVLAVALGLLVGISRRAEALLEPSFQA 136 + W L+ GEL H+A S R ASGF +G+ L + LGLL G R AE LL+ + Q Sbjct: 66 AVLKAAWELSASGELWRHLAVSSGRAASGFAVGAGLGLILGLLSGSLRSAELLLDTTLQM 125 Query: 137 LRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTSSGL 196 +R IP+LA IPL++LW GIDET K+ L+++G FFPVYLN GIR +D LIE+ S GL Sbjct: 126 VRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMAKSYGL 185 Query: 197 STGELIRHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDL 256 S L R ++LP +LP + GLR L L W+ L+ AE I+A G+GY+ + RE + D+ Sbjct: 186 SGWPLYRDVILPGALPAILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDV 245 Query: 257 VLSAILILALLGKVSDSLLRTVEQKSLGWR 286 VL IL+ ALLGK++D+ R +E+ L W Sbjct: 246 VLVGILLYALLGKLADTAARWLERFWLRWH 275 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 130 bits (327), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 144/258 (55%), Gaps = 17/258 (6%) Query: 46 TGWIVPLLFLLAVEAGARLDWIPARLLPPP-------SELAHTL---------W-TLAQR 88 G +VP++ + E +R WI ++LP P E A L W A Sbjct: 11 QGLLVPIIVIALWEGASRAGWINPQILPSPWAVLRKWVEYATPLKPYDPEAGSWLAWAFS 70 Query: 89 GELLPHIAASLARVASGFVIGSVLAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPL 148 GEL+ SL RV +GF+IG+ LA+ LGLL+G S+R L+ + Q +R IP +A+IPL Sbjct: 71 GELVMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPL 130 Query: 149 LLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTSSGLSTGELIRHILLP 208 +LW G+ P + LI++GAFFPV +N +AG+R +D + + G S L ++LP Sbjct: 131 AILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLP 190 Query: 209 ASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLSAILILALLG 268 A++PY+ +G+R G+ A++ ++ AE+IA + G+G+ + + RE D +++ ++ + LLG Sbjct: 191 AAVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLG 250 Query: 269 KVSDSLLRTVEQKSLGWR 286 D + + L W Sbjct: 251 LAIDLGMSRLNNYMLRWH 268 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 114 bits (286), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 89/292 (30%), Positives = 150/292 (51%), Gaps = 15/292 (5%) Query: 3 DPIPLPATLPATP--KLDAAKPP--VARRGATAGAGSTCGGYRPGRFTGWIVPLLFLLAV 58 P+PL L P + A +PP V R GST R G ++ L+ L Sbjct: 6 QPLPLLNALRPDPSAQAQADQPPPLVKMRSFGIAEGSTA---RISIAAGIVILALWWLIA 62 Query: 59 EAGARLDWIPARLLPPPSEL---AHTLWTLAQ-RGELLPHIAASLARVASGFVIGSVLAV 114 + G W+P LP P+E+ A ++W L H+ ASL R+ + VI +L + Sbjct: 63 QTG----WVPHLFLPTPAEVLKVAQSIWEDGYANATLAEHVGASLLRILTAGVIAVLLGI 118 Query: 115 ALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYL 174 +GLL+G++R + +L+ + +P LA++PL+++WLGI E K+ L+ + F PV L Sbjct: 119 PVGLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMFAPVVL 178 Query: 175 NLVAGIRDIDHKLIEVGTSSGLSTGELIRHILLPASLPYLFAGLRGGLSLAWMFLVAAEL 234 + AG+R + + + S G + +L+ ++LP++LP + G+R L + W LVAAEL Sbjct: 179 SAQAGVRSLPQERVNAALSLGATRWQLLTEVVLPSALPEILTGIRIALGVGWSTLVAAEL 238 Query: 235 IAATKGVGYLLSDGRESSRPDLVLSAILILALLGKVSDSLLRTVEQKSLGWR 286 IA+ +G+GY++ D V I ++A +R +E+ + W+ Sbjct: 239 IASNRGIGYMIMSASHFLATDAVFVGIALIATCAFAFSYGMRLLERALVPWK 290 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 102 bits (255), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 110/199 (55%) Query: 85 LAQRGELLPHIAASLARVASGFVIGSVLAVALGLLVGISRRAEALLEPSFQALRAIPSLA 144 L G L + AS R+ +G+ G V+ V LG+ +G LL+P + R IP +A Sbjct: 54 LISDGTLQQSVLASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIA 113 Query: 145 WIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTSSGLSTGELIRH 204 ++ L ++WLG E K+ LI F V LN +AG++ ++ + S G +++ Sbjct: 114 FVTLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILST 173 Query: 205 ILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLSAILIL 264 ++LP+++P++ G R + +++ +V+AE+++A +G+G L+ R SR + V I+ L Sbjct: 174 VILPSTVPFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIAL 233 Query: 265 ALLGKVSDSLLRTVEQKSL 283 +LG + D +LR +K L Sbjct: 234 GILGYLFDRVLRVATRKLL 252 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.140 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 727,500 Number of extensions: 26851 Number of successful extensions: 160 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 17 Length of query: 297 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 212 Effective length of database: 1,217,395 Effective search space: 258087740 Effective search space used: 258087740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)