BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0003.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314062|ref|YP_003778154.1| chromosome partitioning ParB pr...   566   e-163

>gi|300314062|ref|YP_003778154.1| chromosome partitioning ParB
           protein [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  566 bits (1459), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 292/304 (96%), Positives = 298/304 (98%), Gaps = 1/304 (0%)

Query: 1   MATLPKKSKGLGRGLDALLGGSSDITEEAQAQAAQ-GLPTVMAVTELQAGKYQPRTRMDE 59
           MATLPKKSKGLGRGLDALLGGSSDITEEAQAQAA  GLPTVM VTELQAGKYQPRTRMDE
Sbjct: 1   MATLPKKSKGLGRGLDALLGGSSDITEEAQAQAAAQGLPTVMPVTELQAGKYQPRTRMDE 60

Query: 60  GALNELAASIKEQGLLQPILIRAIGQKNGKDTYEIIAGERRFRAAKIAGLTEVPVLVKNV 119
           GALNELAASIKEQGLLQPILIRAIGQKNG+DTYEIIAGERRFRAAKIAGLTEVPVLV+NV
Sbjct: 61  GALNELAASIKEQGLLQPILIRAIGQKNGRDTYEIIAGERRFRAAKIAGLTEVPVLVRNV 120

Query: 120 DDQTTAAMALIENMQREDLNPLEEAQGIHRLITDFAFTHEQAALAVGRSRSAVSNLLRLL 179
           DDQTTAAMALIENMQREDLNPLEEAQGIHRLITDFAFTHEQAA+AVGRSRSAVSNLLRLL
Sbjct: 121 DDQTTAAMALIENMQREDLNPLEEAQGIHRLITDFAFTHEQAAIAVGRSRSAVSNLLRLL 180

Query: 180 NLAKPVQTMLMAGDIDMGHARALLAVDSATQIQLANQIVAKRMSVRDAEKLVTRASAEQA 239
           NLAKPVQTMLMAGDIDMGHARALL VDSATQIQLANQIVAKRMSVRDAEKLVTRASAEQA
Sbjct: 181 NLAKPVQTMLMAGDIDMGHARALLVVDSATQIQLANQIVAKRMSVRDAEKLVTRASAEQA 240

Query: 240 AKPREAKDKSRDIARLEEELSDLLATQVSIKTGARNKGQLIINFNDLDALDGVIARLRGE 299
           AKPRE K+KSRDIARLEEELSDLLATQV+IKTGARNKGQLII+FNDLDALDGVI RLRGE
Sbjct: 241 AKPREGKEKSRDIARLEEELSDLLATQVNIKTGARNKGQLIISFNDLDALDGVITRLRGE 300

Query: 300 SVES 303
           SVES
Sbjct: 301 SVES 304


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 756,198
Number of extensions: 28114
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 130 (54.7 bits)