BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0267.p
         (442 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313320|ref|YP_003777412.1| hypothetical protein Hsero_4033...   108   1e-24
gi|300310080|ref|YP_003774172.1| hypothetical protein Hsero_0745...   105   5e-24

>gi|300313320|ref|YP_003777412.1| hypothetical protein Hsero_4033
           [Herbaspirillum seropedicae SmR1]
          Length = 614

 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 167/373 (44%), Gaps = 50/373 (13%)

Query: 82  EQPMLPYPGNTFSGYRNIQEFFVQPEKFLF--VELTGLQRWSTRSGSHFSVYITLD---- 135
           E  ++ +P  +   YR++ E+F  PEKF F  ++L+ +          F +++ L     
Sbjct: 237 EDALIDFPSQSHPAYRHLTEYFAFPEKFNFFDIDLSAILAVLPADSKSFILHLGLSGLRA 296

Query: 136 --QMPDWMPEIRLDSFMLNVVPAINLFGHPADPISHEHRVTEYRITPEGRTRQHFQVYSV 193
              +   +  +   + +L   P INLF    DPI   H    Y + P+GR    ++VYS+
Sbjct: 297 DSHIARQLGGVSAANLLLGCTPVINLFSQRGDPIRLTHAGAYYPVLPDGRRAFGYEVYSI 356

Query: 194 DEVTGFQQGIGKERV--YVPFGLYRH----DRRGARLSYRTTIRSATVGRGNEMFLS--- 244
           D V   ++    E +  + PF   RH    +  G   + R     A    G E  +S   
Sbjct: 357 DSVQLVRETPQGESITSFRPFYSLRHGQSPESDGHYWAMRRDELIALKSPGYETEISIVD 416

Query: 245 VNYPPGDEPRPETLSVRLTCTNGSLPESLKL----GDISQPTSSSPDRMQFRNIRTVSPA 300
           +++ P  +   +TLS+ LTCTN  LP  L      GD+S         ++   +   +  
Sbjct: 417 IDFDPS-KIETDTLSIELTCTNRDLPALLAYGLPGGDLS---------LEGGGVIRTAAL 466

Query: 301 LNPPT-------GEALLWRMVSHVSLNFLSVANA--ENLQALLSLYVFPERHEQGQEAAN 351
           L  PT       G    WR++S +SLN LS+     E  Q +L+LY      +Q     +
Sbjct: 467 LRKPTLPSRFERGRGAQWRLISQLSLNHLSLMRVGLEAFQEMLTLY------DQSNSPIS 520

Query: 352 RRRIEGIQEVIATPETR-LVGR--GSVLRGQRVRIKCRQDFFAGIGDMYLFGCVIERFIA 408
           +R+I  I  +   P T  L G    S++RG  V++   ++ F G G ++ F  VI+RF+ 
Sbjct: 521 QRQISAIAAIDHRPATAWLPGNPFASLVRGIEVKLTVDEEGFVGSG-LHAFAGVIDRFMG 579

Query: 409 DYAGINSYTRVEM 421
            Y   NS++++ +
Sbjct: 580 LYVHANSFSQLTV 592


>gi|300310080|ref|YP_003774172.1| hypothetical protein Hsero_0745
           [Herbaspirillum seropedicae SmR1]
          Length = 614

 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 164/371 (44%), Gaps = 46/371 (12%)

Query: 82  EQPMLPYPGNTFSGYRNIQEFFVQPEKFLFVEL----------TGLQRWSTRSGSHFSVY 131
           +  ++ +P  +   YR + E+F  PEKF F +L          TG ++++   G   S  
Sbjct: 237 DDALIDFPARSHPAYRLLTEYFCFPEKFNFFDLDLAAILALLPTGTRKFTLHLG--LSGL 294

Query: 132 ITLDQMPDWMPEIRLDSFMLNVVPAINLFGHPADPISHEHRVTEYRITPEGRTRQHFQVY 191
                +   +  +   + +L   P INLF    DPI   H    Y + P+ R    ++VY
Sbjct: 295 RADSHVARQLGGVSAANLLLGCTPVINLFRQRGDPIRLTHAGASYPVVPDARRAFGYEVY 354

Query: 192 SVDEVTGFQQGIGKERV--YVPFGLYRH----DRRGARLSYRTTIRSATVGRGNEMFLS- 244
           S+D V   +Q    E V  + PF   RH    ++ G   + R     A    G E  +S 
Sbjct: 355 SIDSVQLVRQTPQGESVTQFRPFYSLRHGQSPEKEGHYWAMRRDELVALKSPGYETEISI 414

Query: 245 --VNYPPGDEPRPETLSVRLTCTNGSLPESLKLGDISQPTSSSPDRMQFRNIRTVSPALN 302
             +++ P  E   +TLS+ LTCTN  LP SL  G           +M+   +   +  L 
Sbjct: 415 VDIDFDPA-EVETDTLSIELTCTNRDLPASLTYG-----LPGGDLQMEGGGLVRSAALLR 468

Query: 303 PPT-------GEALLWRMVSHVSLNFLSVANA--ENLQALLSLYVFPERHEQGQEAANRR 353
            PT       G    WR++SH+SLN LS+     E  Q +L+LY      +      ++R
Sbjct: 469 KPTLPARFERGRGAHWRLISHLSLNHLSLMRGGLEAFQEMLTLY------DLSNSPISQR 522

Query: 354 RIEGIQEVIATPETR-LVGR--GSVLRGQRVRIKCRQDFFAGIGDMYLFGCVIERFIADY 410
           +I  I  +     T  L G    S++RG  V++   ++ F G G ++ F  VI+RF+  Y
Sbjct: 523 QIGAIVSIDHKASTAWLPGNPFASLVRGIEVKLTVDEEGFVGSG-LHAFAGVIDRFLGLY 581

Query: 411 AGINSYTRVEM 421
              NS+T++ +
Sbjct: 582 VHANSFTQLRV 592


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,451,015
Number of extensions: 62041
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 442
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 354
Effective length of database: 1,203,190
Effective search space: 425929260
Effective search space used: 425929260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)