BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0266.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310081|ref|YP_003774173.1| hypothetical protein Hsero_0746...   105   4e-24
gi|300313319|ref|YP_003777411.1| hypothetical protein Hsero_4032...    88   1e-18

>gi|300310081|ref|YP_003774173.1| hypothetical protein Hsero_0746
           [Herbaspirillum seropedicae SmR1]
          Length = 360

 Score =  105 bits (263), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 152/336 (45%), Gaps = 34/336 (10%)

Query: 10  PSVKDDLLARGERYSYFQAIRLLRLFEKNTGAARPEN-----LRIRPKLSLNFPDNDVDS 64
           PSV + L A   R+ +FQA+R++ L+ K  G A PE      LR   + +L FP +++++
Sbjct: 10  PSVIERLFAAPHRFQFFQAVRMIELWFKRNGVA-PERAVCDFLRFANRTALGFPASEIEA 68

Query: 65  IEARPQGG------------------YRITANFFGLYGVASPLPTYYTEDLFDEEREG-G 105
           I+A                        R+T  F G  G +  LP +YTE +   + E   
Sbjct: 69  IDAVASSDDTSVAGMAQSLREGKMKYVRLTPTFMGFLGGSGALPAHYTERIARHQIEHRD 128

Query: 106 HAQREFIDIVHYALYPLLFEAWSKYRLEQRVVEDGDAAALGHMFSFVGLDEEQLRVGLLP 165
              R F+D+       L ++AWSKYRL  +         L  + S  G+    LR  LL 
Sbjct: 129 EGPRAFLDVFSTRSLALFYQAWSKYRLAFQYEMGRRDKFLPLLLSLSGIGFRSLRERLLE 188

Query: 166 GSA------GLLRYAGLLNQRPRSALGLRTMLADAFPGASVEIDSCVLRVMAIPPDQQWS 219
                     +  +A  L+ RP SA  ++ +L++ F    + I+  V +   +P + Q  
Sbjct: 189 VDGRGVRDESIAHFAAALSHRPASAPYMQQVLSEYF-SIPLTIEQFVGQWYDVPREHQTM 247

Query: 220 LGRQGTSLGEEAYLGSTIDDYGSTLRLRLSELPEALFRQLLPGAAGHQRLRFLTRFYLID 279
           LG   ++LG  A  G  +      +RLRL  L    F Q LPGA   Q L  +   +   
Sbjct: 248 LGSTNSALGT-AMAGQRVWQRDLRMRLRLGPLALPDFEQFLPGARASQALSRMLGVFTGP 306

Query: 280 PLEVEVVLDLRSEEAQGMRCN-SQQWSRLGQDTWLA 314
            LE E+ L LR+E+ +G+  +  +   RLG D+++A
Sbjct: 307 TLEYEIQLILRAEDVRGLGLSPDRTGGRLGWDSFVA 342


>gi|300313319|ref|YP_003777411.1| hypothetical protein Hsero_4032
           [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 148/337 (43%), Gaps = 34/337 (10%)

Query: 10  PSVKDDLLARGERYSYFQAIRLLRLFEKNTGA----ARPENLRIRPKLSLNFPDNDVDSI 65
           PSV + L A   R+ +FQA+R++  + +  G     A  + +R   +  L FP +++++I
Sbjct: 10  PSVIERLFAVPHRFQFFQAVRMIECWFRRNGVPHERAVSDFVRFANRTVLGFPASEIEAI 69

Query: 66  EARP-------------------QGGY-RITANFFGLYGVASPLPTYYTEDLFDEEREG- 104
           +  P                   Q  Y RIT  F G  G +  LP +YTE +   + E  
Sbjct: 70  DTYPSREGEAISVDNMEQALRCGQMKYVRITPTFMGFLGSSGSLPAHYTERVARHQIEHR 129

Query: 105 GHAQREFIDIVHYALYPLLFEAWSKYRLEQRVVEDGDAAALGHMFSFVGLDEEQLRVGLL 164
               R F+D        L + AW+KYRL            L  + S  GL    LR  L 
Sbjct: 130 DEGPRAFLDAFSTRSLALFYHAWNKYRLTFHYDVGRRDTFLPLLLSLSGLGFHSLRQRLQ 189

Query: 165 PGSAGLLR------YAGLLNQRPRSALGLRTMLADAFPGASVEIDSCVLRVMAIPPDQQW 218
            G+   +R      +AG L  RP SAL ++ +L + F    ++I+  +     +P   Q 
Sbjct: 190 DGTGNGVRDESLGYFAGALRHRPPSALYMQKVLGEYF-SVPLQIEQFIGYWYKVPRQHQT 248

Query: 219 SLGRQGTSLGEEAYLGSTIDDYGSTLRLRLSELPEALFRQLLPGAAGHQRLRFLTRFYLI 278
            LG   + LG +A +G  +      +RLR+  +    F + LPG      L  +   +  
Sbjct: 249 VLGSTNSVLG-KAMVGERVWQRDLRMRLRIGPVAIRDFEKFLPGKEVSVALARMLGMFSG 307

Query: 279 DPLEVEVVLDLRSEEAQGMRCNS-QQWSRLGQDTWLA 314
             LE EV + L +++ +GM   S ++  RLG D+++A
Sbjct: 308 STLEYEVEVALLAQDVRGMTLGSMREGGRLGWDSFVA 344


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,146,312
Number of extensions: 50895
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)