BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0264.p (910 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspiri... 98 3e-21 gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 73 1e-13 >gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 824 Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 121/502 (24%), Positives = 199/502 (39%), Gaps = 78/502 (15%) Query: 14 FAFSSDAFKAEVAVVSLTGREAISQMFRFELILVSADANVDFDAMLAHPATLQIFSADGS 73 F + DA AE+ + L EA+S+ + + L L+S DA++ DAM+ + + ADG+ Sbjct: 24 FFINDDAPDAELLINRLEASEALSRDYVYTLELLSDDAHIPLDAMMGKLLRVALTRADGT 83 Query: 74 STTPYHGMLAEFELLQQVDKNFTFYRAVLVPHMWRLSLNRISDVYLGSRKTPDLI-KLVL 132 + G + F L+ D FY A LVP + +L SR + L L Sbjct: 84 QRH-FTGYVERFAFLRS-DGGIAFYEARLVPWL----------AFLASRHNNRIFHHLSL 131 Query: 133 D---------TDKTLKYDIKATATYYERDFVCQHMETHVDFLSRWMERDGLYYYFTHDDK 183 + ++D + R + Q E+ + L R E G +Y++ H Sbjct: 132 EGLSAAIFRAYPMHARWDCQLRHGDPVRTEMFQFDESDSNLLHRRWEDAGWHYHYEHQAD 191 Query: 184 ADTITILD----AKEGHAVDTVTVEYRPADKLDTGVGNKS-VQAFIGNQRPLPKTVTVYD 238 + + D AK V + + G+ S V+ F P + + Sbjct: 192 GHQLRLSDDSTYAKPIDGTGQVPFQRHGGAIEEDGMAQWSAVRQF------QPSSTRLSS 245 Query: 239 YDYANAKVSFKFEHEVSTLNSAVGEIMLQGEHIR--------SDEEGKRYAALRAQELVC 290 YD+ A+ E EV TLN +LQ EH + ++G R + LR +E Sbjct: 246 YDFKAARPQ---EVEVPTLNKQGA--VLQVEHYEYAGAYGFANRDDGDRQSRLRMEEFEA 300 Query: 291 TGKQFAGESTVVGLRSGYFMEMRGHYRDA-------FNAKYLVTEIEHRGSQAGALLNGL 343 + F G L+ G + GH+ + + + L+ +EH + Sbjct: 301 AAQVFEGTGNCRFLQPGRTFRLTGHFSGSAASHDHDRDPELLIISVEHSATNN------- 353 Query: 344 DTPYNRDKSAAPTHYANSFHAIAAEVQFRPPR---VTPWPQLTGTMSAVIDSASSNKIAD 400 Y +D S P YAN + + +RP R P L + V+ A N Sbjct: 354 ---YLQD-SETPPFYANRVRCVRKRIPWRPGRSYYSQPTALLGIQTATVVGPAGEN--LH 407 Query: 401 LDDKGRYLVKLRFNKTDRQDGAGSVRIRMASGYAGTVTEEDGTAKTYGMHAPLHKGAEVL 460 +D+ GR V+ +++ R D S +R+AS ++G E G + G V+ Sbjct: 408 VDEYGRVKVQFHWDQIGRNDERSSAWLRVASSWSGG---EQGLVSVPRI------GQLVI 458 Query: 461 LSFEGGDPDRPVIMSAVANSEN 482 + + GG PDRP+I +V N N Sbjct: 459 VQWLGGHPDRPIITGSVVNQLN 480 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 118/512 (23%), Positives = 193/512 (37%), Gaps = 76/512 (14%) Query: 25 VAVVSLTGREAISQMFRFELILVSADANVDFDAMLAHPATLQIFSADGSSTTPYHGMLAE 84 +AV G E+++ FRF++ +S ++D + +L++ ADG T +HG + Sbjct: 42 LAVERFEGEESVNDNFRFDIDALSISTDLDLKQFIGAEISLRLLQADGG-TRAWHGYCTQ 100 Query: 85 FELLQQVDKNFTFYRAVLVPHMWRLSLNRISDVYLGSRKT-PDLIKLVLDTDKTLKYDIK 143 L D YR L + L+R D +L T D+ VL + ++ Sbjct: 101 ASWLG-ADGGLARYRLRLESFL--AFLDRRHDSFLFQDMTVTDIAAAVLKEYPQANFSLE 157 Query: 144 ATATYYERDFVCQHMETHVDFLSRWMERDGLYYYFTHDDKADTITILDAKEGHAVDTVTV 203 T T +RD Q+ ET FL R + +GL + F H ++ D D + HA + + Sbjct: 158 VTQTLAKRDICTQYRETDYAFLRRILASEGLNFRFEH-EQDDATQQHDQSQPHARHKLVI 216 Query: 204 --------------EYRPADKLDTGVGNKSVQAFIGNQRPLPKTVTVYDYDYANAKVSFK 249 EY ++ + ++ F + P V + + K+S Sbjct: 217 FDRNAKAPALPGGDEYIRFHRVAAMEASDAITDFAAVRSVRPNGVALASWH--PEKLSSP 274 Query: 250 FEHEVSTLNSAVGEI----MLQG---EHIRSDEEGKRYAALRAQELVCTGKQFAGESTVV 302 E STL++ GE+ + G + + +A L Q L K+F G Sbjct: 275 SHEEGSTLDA--GELPSLPVYDGTGQQDFADQDAAAAHAQLMLQALEMQNKRFEGAGAAR 332 Query: 303 GLRSGYFMEMRGH--YRDAFNAKYLVTEIEHRGSQ-------------AGALLNGLDTPY 347 L +G + H Y + NA + V + H AGAL G Sbjct: 333 QLAAGARFTLLQHERYPEGENA-FKVVSVRHAARNNVSANITRILAPAAGALFGG-SAAA 390 Query: 348 NRDKSAAPTHYANSFHAIAAEVQFRPPRVTPW--PQLTGTMSAVIDSASSNKIADLDDKG 405 RD Y NSF AI V P + P GT +A++ A+ + D Sbjct: 391 ERDDDLQAGTYRNSFTAIRDSVPMVPAAIAERLKPTARGTQTALVTGAADAAVT-TDRNH 449 Query: 406 RYLVKLRFNKTDRQDGAGSVRIRMASGYAGTVTEEDGTAK------------------TY 447 R V+ + + + G +R G + ++DG A + Sbjct: 450 RVKVQFHWQR-GKSPNPGGLR------ETGNLDDKDGNANGNDSSGTWIRVAEAQSGPNW 502 Query: 448 GMHAPLHKGAEVLLSFEGGDPDRPVIMSAVAN 479 G G+EVL+ F GD DRPV+++ + N Sbjct: 503 GSQFIPRVGSEVLVDFIEGDIDRPVVVAQLYN 534 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.127 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,434,909 Number of extensions: 94038 Number of successful extensions: 296 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 294 Number of HSP's successfully gapped: 2 Length of query: 910 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 816 Effective length of database: 1,174,780 Effective search space: 958620480 Effective search space used: 958620480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 135 (56.6 bits)