BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0263.p
         (322 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312979|ref|YP_003777071.1| UDP-glucose 6-dehydrogenase [He...   352   2e-98
gi|300311320|ref|YP_003775412.1| UDP-glucose 6-dehydrogenase [He...   297   9e-82
gi|300312048|ref|YP_003776140.1| UDP-N-acetyl-D-mannosaminuronat...    56   5e-09

>gi|300312979|ref|YP_003777071.1| UDP-glucose 6-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 459

 Score =  352 bits (903), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 174/183 (95%), Positives = 177/183 (96%)

Query: 1   MKITIIGTGYVGLVTGACLAELGNDVFCLDVDQRKVDILNNGGIPIHEPGLEEVVARNRA 60
           MKITIIGTGYVGLVTGACLAELGNDVFCLDVDQRKVDILNNGGIPIHEPGLEEVV RNRA
Sbjct: 1   MKITIIGTGYVGLVTGACLAELGNDVFCLDVDQRKVDILNNGGIPIHEPGLEEVVERNRA 60

Query: 61  AGRLHFSTDVAASVAHGDIQFIAVGTPPDEDGSADLQYVLAAARNIGRHMEGFKVVVDKS 120
           AGRL FSTDVAASVAHGDIQFIAVGTPPDEDGSADLQYVLAAARNIGR+MEGFKVVVDKS
Sbjct: 61  AGRLQFSTDVAASVAHGDIQFIAVGTPPDEDGSADLQYVLAAARNIGRYMEGFKVVVDKS 120

Query: 121 TVPVGTADRVTAAIREELAGRGKTELSFSVVSNPEFLKEGAAVEDFMRPDRIVIGHDQTA 180
           TVPVGTADRV AAI +ELA RGKTELSFSVVSNPEFLKEGAAVEDFMRPDRIVIGHDQ+ 
Sbjct: 121 TVPVGTADRVKAAIADELAQRGKTELSFSVVSNPEFLKEGAAVEDFMRPDRIVIGHDQSP 180

Query: 181 EGL 183
           EGL
Sbjct: 181 EGL 183


>gi|300311320|ref|YP_003775412.1| UDP-glucose 6-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 458

 Score =  297 bits (760), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 156/246 (63%), Positives = 188/246 (76%), Gaps = 6/246 (2%)

Query: 1   MKITIIGTGYVGLVTGACLAELGNDVFCLDVDQRKVDILNNGGIPIHEPGLEEVVARNRA 60
           M IT+IGTGYVGLVTGACLAELGN VFCLDVD+ K++ILN+GG+PI+EPGL+E++ARNRA
Sbjct: 1   MNITVIGTGYVGLVTGACLAELGNKVFCLDVDRNKIEILNSGGVPIYEPGLKEIIARNRA 60

Query: 61  AGRLHFSTDVAASVAHGDIQFIAVGTPPDEDGSADLQYVLAAARNIGRHMEGFKVVVDKS 120
           +GRL FSTDVAASVAHG++QFIAVGTPPDEDGSADLQYV+AAARNIGRHME   +VVDKS
Sbjct: 61  SGRLIFSTDVAASVAHGEVQFIAVGTPPDEDGSADLQYVVAAARNIGRHMERNCIVVDKS 120

Query: 121 TVPVGTADRVTAAIREELAGRGKTELSFSVVSNPEFLKEGAAVEDFMRPDRIVIGHDQTA 180
           TVPVGT ++V AAIR EL  RG+ EL   +VSNPEFLKEGAAVEDFMRPDRIVIG ++ A
Sbjct: 121 TVPVGTGEKVKAAIRAELEARGRGELDAMIVSNPEFLKEGAAVEDFMRPDRIVIGVEEGA 180

Query: 181 EGLPWRQRHCHEGGGLRDQAQGVEVPVTDHQQLLEHAAH--LGGDQHFLHRLA--ARRMG 236
            G   R+        L    + +        +  ++AA+  L     F++ LA  A R+G
Sbjct: 181 AGAEAREVMRELYAPLNRNHERILYMDVKSAEFTKYAANAMLATRISFMNELANLADRLG 240

Query: 237 AAVDLE 242
             VD+E
Sbjct: 241 --VDIE 244


>gi|300312048|ref|YP_003776140.1| UDP-N-acetyl-D-mannosaminuronate
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 426

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 7/175 (4%)

Query: 3   ITIIGTGYVGLVTGACLAELGNDVFCLDVDQRKVDILNNGGIPIHEPGLEEVVARNRAAG 62
           + ++G GYVGL       E G     +  D  +  I N       +P  E   A  RAA 
Sbjct: 4   VAVVGLGYVGL---PLAVEFGKKRATVGFDLSRSKIENYRRFV--DPTGEVSSAELRAAS 58

Query: 63  RLHFSTDVAASVAHGDIQFIAVGTPPDEDGSADLQYVLAAARNIGRHMEGFKVVVDKSTV 122
           +L  STD  A +A  D   +AV TP DE  + D   +  A++ +G+HM+   +VV +STV
Sbjct: 59  QLTVSTD-PAILADADYIVVAVPTPVDEAHNPDFGPLAGASQTVGKHMKRGAIVVFESTV 117

Query: 123 PVGTADRVTAAIREELAGRGKTELSFSVVSNPEFLKEGAAVEDFMRPDRIVIGHD 177
             G  + V   + E+ +G  K    F V  +PE +  G          +IV G D
Sbjct: 118 YPGATEEVCVPLLEKYSGL-KWRDDFHVGFSPERINPGDKQHTLTNILKIVSGDD 171


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,154,884
Number of extensions: 53425
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,217,395
Effective search space: 288522615
Effective search space used: 288522615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)