BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0261.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312980|ref|YP_003777072.1| N-acetylglucosaminyl transferas...   239   1e-64

>gi|300312980|ref|YP_003777072.1| N-acetylglucosaminyl transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  239 bits (611), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/128 (93%), Positives = 126/128 (98%)

Query: 8   PDLPAEHQGHALYELGQDYLKAGLLDRAEETFNKLIDTPYSAQAGRALLEIYQREKEWER 67
           PDLPAEH GHALYELGQDYLKAGLLDRAEE+FN+LIDT YSAQAGRALLEIYQREKEWER
Sbjct: 100 PDLPAEHHGHALYELGQDYLKAGLLDRAEESFNRLIDTQYSAQAGRALLEIYQREKEWER 159

Query: 68  AISAAEILQATGAGGRQREIAQFYCELAADELVRTNTDAAMALLDKALAADRKSVRATML 127
           AISAAEILQATGAGGRQREIAQFYCELAADELVRTNT+AAMALL+KALAADRKSVRATML
Sbjct: 160 AISAAEILQATGAGGRQREIAQFYCELAADELVRTNTEAAMALLEKALAADRKSVRATML 219

Query: 128 IGDALRAR 135
           +GDALRA+
Sbjct: 220 MGDALRAQ 227


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 722,423
Number of extensions: 27860
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)