BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0246.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312991|ref|YP_003777083.1| 3-demethylubiquinone-9 3-methyl...   471   e-134

>gi|300312991|ref|YP_003777083.1| 3-demethylubiquinone-9 3-methyl
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  471 bits (1213), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/240 (95%), Positives = 231/240 (96%), Gaps = 3/240 (1%)

Query: 1   MNTT---NATMNADPQEIQKFSELAHRWWDPGSEFRPLHEINPLRLEWINARAPLAGKKV 57
           MNTT    A +NADPQEIQKFSELAHRWWDPGSEFRPLHEINPLRLEWINARAPLAGKKV
Sbjct: 1   MNTTTAPQANVNADPQEIQKFSELAHRWWDPGSEFRPLHEINPLRLEWINARAPLAGKKV 60

Query: 58  IDIGCGGGILAESMAKKGADVTGIDLSDKALKVADLHSMESGVQVRYEKIAAEDMAAREA 117
           IDIGCGGGILAESMA KG DVTGIDLSDKALKVADLHSMESGVQVRYEKIAAEDMAAREA
Sbjct: 61  IDIGCGGGILAESMALKGGDVTGIDLSDKALKVADLHSMESGVQVRYEKIAAEDMAAREA 120

Query: 118 GQYDVVTCMEMLEHVPDPAAIVRAAANLAKPGGKLFFSTLNRNMKSYVMAIIGAEYVLRL 177
           GQYDVVTCMEMLEHVPDPAAIVRAAA LAKPGGKLFFSTLNRNMKSY+MAIIGAEYVLRL
Sbjct: 121 GQYDVVTCMEMLEHVPDPAAIVRAAATLAKPGGKLFFSTLNRNMKSYLMAIIGAEYVLRL 180

Query: 178 LPKGTHDYAKFITPAELAHYTREAGLQIDGFKGMGYNPLTKIYSLNDDTSVNYLVACTKL 237
           LPKGTHDYAKFITPAELAHYTR+A LQIDGFKGMGYNPLTKIYSLNDDTSVNYLVACTKL
Sbjct: 181 LPKGTHDYAKFITPAELAHYTRQADLQIDGFKGMGYNPLTKIYSLNDDTSVNYLVACTKL 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 773,569
Number of extensions: 32843
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)