BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0245.p
         (146 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase [H...   256   4e-70
gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase [H...    63   1e-11

>gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score =  256 bits (655), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 133/146 (91%), Positives = 137/146 (93%)

Query: 1   LRVLFLDRYQANMTTHSSLFDGIPELLAQLEARGIAWGIVTNKAARFTDVLAPQIGLGHA 60
           LRV FLDRYQANMTTHS LFDGIPELL QLEARGIAWGIVTNKAARFTDVLAPQIGLGHA
Sbjct: 73  LRVRFLDRYQANMTTHSRLFDGIPELLVQLEARGIAWGIVTNKAARFTDVLAPQIGLGHA 132

Query: 61  GCIVSGDTTPHPKPHPAPLLEAAKRLGLPPEDCWYVGDDLRDIQAGRAANMPTIAAAWGY 120
           GCIVSGDTTPH KPHPAPLLEAA+RL L PEDCWYVGDDLRDIQAG+AA MPTIAAAWGY
Sbjct: 133 GCIVSGDTTPHSKPHPAPLLEAARRLQLTPEDCWYVGDDLRDIQAGKAAAMPTIAAAWGY 192

Query: 121 CGHSEPAAWQADALLHAPLDILTLLD 146
           CGH+EPA W+ADALLHAPL ILTLLD
Sbjct: 193 CGHTEPAGWEADALLHAPLQILTLLD 218


>gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score = 62.8 bits (151), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 7   DRYQANMTTHSSLFDGIPELLAQLEARGIAWGIVTNKAARFTDVLAPQIGLGHAGCIV-S 65
           + Y A    +SSL+ G+ E L  L  +G+    VTNK   F   L  + GL     IV  
Sbjct: 84  EHYLAINGDYSSLYPGVLEGLQALRNKGLRLACVTNKPLAFAVPLLQKKGLRDFFEIVYG 143

Query: 66  GDTTPHPKPHPAPLLEAAKRLGLPPEDCWYVGDDLRDIQAGRAANMPTIAAAWGYCGHSE 125
           GD+ P  KP P PLL+  +   L P     +GD   D QA RAA    +   +GY  H E
Sbjct: 144 GDSFPKKKPDPMPLLQVCQDFALAPAQVVAIGDSSNDAQAARAAGCRVLNVPYGY-NHGE 202


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 541,279
Number of extensions: 24033
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 146
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,255,275
Effective search space: 86613975
Effective search space used: 86613975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)