BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0244.p (1126 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312993|ref|YP_003777085.1| hypothetical protein Hsero_3699... 1668 0.0 >gi|300312993|ref|YP_003777085.1| hypothetical protein Hsero_3699 [Herbaspirillum seropedicae SmR1] Length = 1124 Score = 1668 bits (4320), Expect = 0.0, Method: Compositional matrix adjust. Identities = 848/1107 (76%), Positives = 962/1107 (86%), Gaps = 16/1107 (1%) Query: 1 MSKPDRASLTQHLAWQRMRRPLRWAGWTLAVLLVLAALSWAALPALVRKIAVDQTQAQIG 60 MSKP ASLT+ AWQR+RRPL+W W LAVLL LAALSWAALPALVRK+AV+QTQAQ+G Sbjct: 1 MSKPGLASLTKQPAWQRLRRPLKWLAWMLAVLLALAALSWAALPALVRKLAVEQTQAQLG 60 Query: 61 RKLEIGEISFNPFKLALRASDITLYEADGTQPFFSAKDLLADLSAASLLRLAPVLDEIRL 120 RKL++G +SFNPF+LAL+ SDITLYEADG PF + + LL D S+ASLL LAPVLDE+RL Sbjct: 61 RKLDVGAVSFNPFRLALQVSDITLYEADGKTPFLAVQSLLVDASSASLLCLAPVLDEVRL 120 Query: 121 STPQLHVVRVDAEGGGHYNFSDILDRLAAQPKSEGQARFSLANVQLQDGQIRFEDKVSGK 180 S PQL V R+DA+ GGHYNFSDIL+RLAAQPKSEGQARFSLANVQLQDG I FEDK++GK Sbjct: 121 SKPQLRVQRIDADQGGHYNFSDILERLAAQPKSEGQARFSLANVQLQDGAIHFEDKLTGK 180 Query: 181 NIDIAALQVGLPFISNLPGNIDSFVQPQLSATINGTPLHLKGRSKPFASTQESAFAIDID 240 IDIAALQVGLPFISNLPGNIDSFVQPQLSATINGTPLHLKGRSKPF+ST ESAFAIDI+ Sbjct: 181 TIDIAALQVGLPFISNLPGNIDSFVQPQLSATINGTPLHLKGRSKPFSSTLESAFAIDIE 240 Query: 241 QLDLVGYLPFVPAELPVIIQSAKLSTKLDLGFTRKDDKPTVTLAGDVRLDDVALQDKARA 300 +LDLV YLPFVP ELPV++QS LST+LDLGF R+ DKPT+TLAGDV LDD+A+ D+A+A Sbjct: 241 RLDLVSYLPFVPMELPVLLQSGHLSTRLDLGFNRQQDKPTITLAGDVVLDDIAVADRAKA 300 Query: 301 PLLKAKSVALQVKQFDLLAASGELNQLTLEQPQVWASMNARGEINWQRALAGGGSAGGKN 360 PLLKA+ +A+++ QFD+LAASG+++Q+TLEQPQ+WASMN RGEINW RALA A GK Sbjct: 301 PLLKARQLAVKLGQFDVLAASGQISQVTLEQPQIWASMNGRGEINWVRALAA--PATGKR 358 Query: 361 SAGTAKKDAPAPAASTPQPAAPIVLQQLTVRGGEVNWRDEANAAPAQSIKLSKIDINATQ 420 +A + + +A IVLQQL VR G VNWRDEANA+PAQ+++LS I+I+A Q Sbjct: 359 TAASQAATSAQASA--------IVLQQLNVRDGRVNWRDEANASPAQNVQLSGIEIDAAQ 410 Query: 421 LSTAADAKPAHLTLSAVENGHGKLAFDGQLQPLKPGVAGKITLENIDLAGYQNYLSRAPI 480 LSTAA+A+PA L ++A+ENGHG+L F+GQ+ PLKP VAGK+TL IDLAGY+NYL RAP+ Sbjct: 411 LSTAANAQPATLKVTAIENGHGRLGFEGQVAPLKPAVAGKLTLAGIDLAGYRNYLHRAPV 470 Query: 481 SGVAGKLSGQTTLQLRDGHLKLDDSKVQLADLRLTPPGKGAQPLALESLSLQAPTLTDTL 540 SG+AGKLSG +TLQ RDGHLKLDDS V+LA L+LTP GK QP+++ESL L+ +TDT Sbjct: 471 SGLAGKLSGNSTLQWRDGHLKLDDSTVELASLQLTPEGKSTQPISVESLKLRVQNVTDTF 530 Query: 541 DQAIPFKLQARFDKNGSADLAGQAAAHFRSVALDLDVKDLPITPFQHYFTDVLNVTISSG 600 DQA+P LQAR DKNGSAD+ GQ A H ++ LDLD+++LPI P Q YFTD+LNV+IS+G Sbjct: 531 DQAMPLTLQARLDKNGSADITGQIAPHLKNADLDLDLRELPIAPVQGYFTDILNVSISNG 590 Query: 601 LASAKGKLELTPPLDDRKLALDYKGSAAITNLRMQDKQTSTDFLRWRTLELAGIQAKLGG 660 SAKGKL LT PL +K ALDYKG+AAI NLRMQDK TSTDFLRWRTL LAGI AKLGG Sbjct: 591 ALSAKGKLALTLPLQQQKFALDYKGNAAIANLRMQDKLTSTDFLRWRTLTLAGINAKLGG 650 Query: 661 RPQAEQSDHQALEKVTLSNFYARAILSDKGRLNLQDIVVADAQEQGSITDDSKKTDKPAN 720 R Q AL+KVTL++FYARAILS+KGRLNLQDI+VAD Q QGSITDDSKK DK Sbjct: 651 RAQI------ALDKVTLNSFYARAILSEKGRLNLQDILVADGQPQGSITDDSKKDDKENR 704 Query: 721 TGSSRKTVSATPVTPATAPADAPIVRVGQVVLAGGNINYTDNFVKPNYTANMTGLSGSIG 780 SSRK+VS+TPVT A ADAPIVRVGQVVL GGNINYTDNFVKPNYTANMTGL+GSIG Sbjct: 705 RDSSRKSVSSTPVTSPAARADAPIVRVGQVVLEGGNINYTDNFVKPNYTANMTGLAGSIG 764 Query: 781 QISSEKPQPAPVNISGKIDNDAPLQISGSLNPLFKPMYLDLKASANGVQLPRLTPYSAKY 840 +ISSEKPQPAPVNISGKIDNDAPLQISG+LNPLFKPMYLDLKASANGVQLPRLTPYSAKY Sbjct: 765 EISSEKPQPAPVNISGKIDNDAPLQISGALNPLFKPMYLDLKASANGVQLPRLTPYSAKY 824 Query: 841 AGYPITKGKLSMDVQYKIENDKLVAQNDLRIEQLSFGERVDSPDATNLPVMLAVSLLKDR 900 AGYPITKGKLSMDVQYKIENDKLVAQNDLRIEQL+FGERVDSP+ATNLPVMLAVSLLKDR Sbjct: 825 AGYPITKGKLSMDVQYKIENDKLVAQNDLRIEQLTFGERVDSPNATNLPVMLAVSLLKDR 884 Query: 901 DGNINLNLPISGSLSDPEFSVGGIIVRVFVNLIVKAVTSPFALIGSMFRADEHIGELRYI 960 +GNINLNLPISGSLSDPEFSVGGIIVRVFVNLI KAVTSPFALIGSMFR+DE+IGELRYI Sbjct: 885 NGNINLNLPISGSLSDPEFSVGGIIVRVFVNLIAKAVTSPFALIGSMFRSDENIGELRYI 944 Query: 961 EFSPGSSEVTDEVRKKLDALGYALHERPGIKLDITGRVDPQVDDQGLRREALERAMRSLK 1020 EF GS+E+ EVRKKLDALGY LHERPGIKLDI GRVDPQVDDQGLR+EALER MR K Sbjct: 945 EFPAGSAEIDAEVRKKLDALGYVLHERPGIKLDIMGRVDPQVDDQGLRKEALERQMRGYK 1004 Query: 1021 RADLIAKEGQPDGPVRVSAAERAKYLERVYKDAKFDKPRNMIGLSKSLPEAEMEKLILEH 1080 RA+LIA+EGQP GPVR++ ER+KYLER YK+AKFDKPRNMIGL++SLP AEMEKLILEH Sbjct: 1005 RAELIAREGQPSGPVRLTDVERSKYLERAYKEAKFDKPRNMIGLARSLPPAEMEKLILEH 1064 Query: 1081 TEVTKDDLRNLAQRRADQVRNYLQEQS 1107 T+V+ DDLR+LAQRRADQVRNYLQEQS Sbjct: 1065 TQVSPDDLRSLAQRRADQVRNYLQEQS 1091 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.132 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,255,540 Number of extensions: 133423 Number of successful extensions: 463 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 457 Number of HSP's successfully gapped: 1 Length of query: 1126 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1030 Effective length of database: 1,165,310 Effective search space: 1200269300 Effective search space used: 1200269300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 136 (57.0 bits)