BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0243.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312995|ref|YP_003777087.1| hypothetical protein Hsero_3701...   308   2e-85

>gi|300312995|ref|YP_003777087.1| hypothetical protein Hsero_3701
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  308 bits (790), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 174/218 (79%), Positives = 183/218 (83%), Gaps = 11/218 (5%)

Query: 1   VGKLALEAAYGALSAAPPAIASSPADDASKDAQD--IPVVFASRHGECARSVELQMALAA 58
           VGKLALE AYGAL+AA    AS P+ DA   A D  IPVVFASRHGECARSVELQMALA 
Sbjct: 12  VGKLALETAYGALTAA----ASHPSHDARPAASDLDIPVVFASRHGECARSVELQMALAE 67

Query: 59  AAPMSPTAFSLSVHNANAGLFSIARGSQANTVAIAAGQSTVEHAVIEACGLLADGARQVL 118
           AAPMSPTAFSLSVHNANAGLFSIARGS ANTVAIAAGQSTVEHAVIEACGLLADGA QVL
Sbjct: 68  AAPMSPTAFSLSVHNANAGLFSIARGSAANTVAIAAGQSTVEHAVIEACGLLADGAPQVL 127

Query: 119 LVVADAPLPTLFSDFADEHEEPCGWSWLMQAADEHGALPTVSLQWQQIQPGHGTLP---- 174
           +VVADAPLPT+F+DFADE EEPCGWSWL+QAADE  ALPT+SLQWQQ  P  G +     
Sbjct: 128 VVVADAPLPTMFADFADEQEEPCGWSWLIQAADEQDALPTLSLQWQQ-APAGGDVDVASH 186

Query: 175 SENATAGAAAVLRFFLDASTSTLHRQADGRRWHWMRHA 212
           + NA AGAAAVLRFFLDA  STLHR ADGRRW WMRHA
Sbjct: 187 ANNAAAGAAAVLRFFLDADASTLHRHADGRRWQWMRHA 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.127    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 581,291
Number of extensions: 22309
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)