BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0237.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313001|ref|YP_003777093.1| glycosyl transferase, group 2 f...   465   e-132

>gi|300313001|ref|YP_003777093.1| glycosyl transferase, group 2
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 262

 Score =  465 bits (1197), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/254 (88%), Positives = 235/254 (92%)

Query: 1   MKTGISHSTIVVIPVYDHEHAIGAVVAAVRGHGLPCILVDDGSSPACATVLQQLAAAEPQ 60
           M   ++H T+VVIPV+DHEHAIGAVVAAVR HGLPCILVDDG SP CA VL+QLAAA+PQ
Sbjct: 1   MNASVAHRTVVVIPVFDHEHAIGAVVAAVRSHGLPCILVDDGCSPGCAAVLRQLAAADPQ 60

Query: 61  HVTLLVHPHNQGKGGAVMTGLRHAAAAGYTHALQIDADGQHDSADIPRFLAASQAAPAAV 120
             TLLVHPHNQGKGGAVMTGLRHAAAAGYTHALQIDADGQHDSADIPRFLAASQAAP AV
Sbjct: 61  ATTLLVHPHNQGKGGAVMTGLRHAAAAGYTHALQIDADGQHDSADIPRFLAASQAAPQAV 120

Query: 121 INGKPIYDESVPKGRLYARYLTHVWVWINTLSLEIADSMCGFRLYPLAPTLQLMDQAHIG 180
           ING+P+YDESVPKGRLYARYLTHVWVWINTLSLEI DSMCGFRLYPLAPTLQL+D+  IG
Sbjct: 121 INGRPVYDESVPKGRLYARYLTHVWVWINTLSLEIVDSMCGFRLYPLAPTLQLIDRTTIG 180

Query: 181 RRMDFDTEILVRLYWRGLRVQNLATRVRYPADGVSHFQVWLDNVLISRMHARLFFGMLLR 240
           RRMDFDTEILVRLYWRGLRV NLATRVRYPADGVSHFQVWLDNVLISRMHARLF GMLLR
Sbjct: 181 RRMDFDTEILVRLYWRGLRVHNLATRVRYPADGVSHFQVWLDNVLISRMHARLFLGMLLR 240

Query: 241 APVLLARGSWRRLG 254
           AP+LL R  WRRLG
Sbjct: 241 APLLLGRSCWRRLG 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 916,909
Number of extensions: 39692
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)