BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0235.p
         (403 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313003|ref|YP_003777095.1| histidine ammonia-lyase [Herbas...   764   0.0  
gi|300313821|ref|YP_003777913.1| histidine ammonia-lyase [Herbas...   163   2e-41

>gi|300313003|ref|YP_003777095.1| histidine ammonia-lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 526

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/390 (95%), Positives = 383/390 (98%)

Query: 1   MPHTDVSSSASSSPIRFGAQPLSIEDVVALARRERTAQLHDADSFRARIARGADFLDRLL 60
           MPHTD++SSASS+PIRFGAQPL+IEDVVALARRER+AQLHDA  FRARIARGADFLDRLL
Sbjct: 1   MPHTDLTSSASSTPIRFGAQPLAIEDVVALARRERSAQLHDAPDFRARIARGADFLDRLL 60

Query: 61  REDGTIYGVTTGYGDSCTVTVPPELVPELPHHLYTYHGCGLGALFTPEQSRAILAARLNS 120
           REDGTIYGVTTGYGDSCTVTVPPELVPELPHHLYTYHGCGLGALFTPEQ+RAILAARLNS
Sbjct: 61  REDGTIYGVTTGYGDSCTVTVPPELVPELPHHLYTYHGCGLGALFTPEQARAILAARLNS 120

Query: 121 LCQGFSGVSVALLEQITALLHHDLLPQIPCEGSVGASGDLTPLSYLAAVLCGERQVWRDG 180
           LCQGFSGVSVALLEQIT LL HDLLPQIPCEGSVGASGDLTPLSYLAAVLCGER VWR+G
Sbjct: 121 LCQGFSGVSVALLEQITGLLQHDLLPQIPCEGSVGASGDLTPLSYLAAVLCGERDVWREG 180

Query: 181 ATVPAAEALAGAGMTPLRLRPKEGLAIMNGTAVMTALACLAFDRARYLCQLATRITAMSS 240
           ATVPAA+ALA AGMTPLRLRPKEGLAIMNGTAVMTALACLAFDRARYLCQLATRITAMSS
Sbjct: 181 ATVPAAQALAAAGMTPLRLRPKEGLAIMNGTAVMTALACLAFDRARYLCQLATRITAMSS 240

Query: 241 FTLDGNAHHFDATLFSAKPHPGQQQVAGWLQRDLPCGQAHRNEKRLQDRYSVRCAPHVIG 300
           FTLDGNAHHFDATLFSAKPHPGQQQVA WLQRDLPCGQAHRNEKRLQDRYSVRCAPHVIG
Sbjct: 241 FTLDGNAHHFDATLFSAKPHPGQQQVAAWLQRDLPCGQAHRNEKRLQDRYSVRCAPHVIG 300

Query: 301 VLNDALPSLRQFIENELNSANDNPLIDPDGERVLHGGHFYGGHIAFAMDSMKTAVANIAD 360
           VLNDALPSLRQFIENELNSANDNPLIDPDGERVLHGGHFYGGHIAFAMDSMKTAVAN+AD
Sbjct: 301 VLNDALPSLRQFIENELNSANDNPLIDPDGERVLHGGHFYGGHIAFAMDSMKTAVANVAD 360

Query: 361 LLDRQMALMVDQRYNNGLPANLSGAQGARA 390
           LLDRQMALMVDQRYNNGLPANLSGAQGARA
Sbjct: 361 LLDRQMALMVDQRYNNGLPANLSGAQGARA 390


>gi|300313821|ref|YP_003777913.1| histidine ammonia-lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score =  163 bits (413), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/404 (32%), Positives = 204/404 (50%), Gaps = 30/404 (7%)

Query: 13  SPIRFGAQPLSIEDVVALARRERTAQLHDADSFRARIARGADFLDRLLREDGT--IYGVT 70
           S I      L+   VV++AR     ++  ADS RA + +  D+++     D    +Y   
Sbjct: 2   STITIDGFNLTAAQVVSVARAPHL-KVALADSSRAALKQSRDYIESTWMHDEAPMMYSFN 60

Query: 71  TGYGDSCTVTVPPELVPELPHHLYTYHGCGLGALFTPEQSRAILAARLNSLCQGFSGVSV 130
           TG G      +  E +      L   H  G+G  F+ E SRA +  R N+    +S   V
Sbjct: 61  TGVGLLKDTRIKVEHIELFQTQLIRAHSAGIGEAFSEEVSRATMLLRANAFASNYSAPRV 120

Query: 131 ALLEQITALLHHDLLPQIPCEGSVGASGDLTPLSYLAAVLCG--ERQVWRDGATVPAAEA 188
            +++++ A ++  + P +P +GSVGASGDL PL+YLAA + G  E +V   G  + A EA
Sbjct: 121 EVVDRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLAAAIAGFDEAEVMYQGQRMRATEA 180

Query: 189 LAGAGMTPLR--LRPKEGLAIMNGTAVMTALACLAFDRARYLCQLATRITAMSSFTLDGN 246
           +  AG+ P++  L+ K+  A++NG     A+A LA   AR+L   A     ++   +   
Sbjct: 181 IEQAGIGPVKFDLKAKDASALINGCTASLAVAILAAHDARHLLTDACLSLGLTLEAMRAE 240

Query: 247 AHHFDATLFSAKPHPGQQQVA----GWLQRDLPCGQAHRNEK--------------RLQD 288
              FD  +  A+PH GQ + A      LQ       A R  +              R+QD
Sbjct: 241 MSAFDPRIQQARPHAGQIKTAEVIRTLLQGSTRTTHAARAVQLPDELRRTDIAYTARIQD 300

Query: 289 RYSVRCAPHVIGVLNDALPSLRQFIENELNSANDNPLI----DPDGERVLHGGHFYGGHI 344
            YS+RCAP V G + DAL  +   IE E NSA DNPLI    + +G  ++ GG+F+G ++
Sbjct: 301 VYSLRCAPQVYGPVFDALDYIDTIIEKETNSATDNPLIFHKEEGEGFEIISGGNFHGQYL 360

Query: 345 AFAMDSMKTAVANIADLLDRQMALMVDQRYNNGLPANL-SGAQG 387
           A AMD +  A+ ++  + +R++A ++D   + GLP NL SG +G
Sbjct: 361 AQAMDLLAMAITDLGSICERRIARLIDPTLSWGLPRNLMSGVRG 404


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,306,842
Number of extensions: 55831
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 2
Length of query: 403
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 316
Effective length of database: 1,207,925
Effective search space: 381704300
Effective search space used: 381704300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)