BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0232.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313005|ref|YP_003777097.1| hypothetical protein Hsero_3711...   350   5e-98

>gi|300313005|ref|YP_003777097.1| hypothetical protein Hsero_3711
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  350 bits (898), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 186/203 (91%), Positives = 193/203 (95%)

Query: 1   MNARTFLVSLAWLAVLPAAHAAAPVQQIQATLAKPAVMCGRFDQTKQLTGIKKPLQAQGR 60
           MN R+ L SLA LA+LP A AAAPVQQIQATLAKPAVMCGRFDQTKQLTGIKKPLQA GR
Sbjct: 1   MNTRSLLCSLALLALLPTARAAAPVQQIQATLAKPAVMCGRFDQTKQLTGIKKPLQAYGR 60

Query: 61  FCVLKGRGILWQTLQPFPSTLRITREAIVQIQDGRVAMKLDAQQEPVVKMINSVLFSLLA 120
           FCVLKGRGILWQTLQPFPSTLRITR+AIVQIQDGRVAMKLDAQQEPVVKMINSVLFSLLA
Sbjct: 61  FCVLKGRGILWQTLQPFPSTLRITRDAIVQIQDGRVAMKLDAQQEPVVKMINSVLFSLLA 120

Query: 121 GDLSQLDTLFELDGSLREGHWQVALKARQPALAKAIGDISLAGASYVEKVDMKEASGDRT 180
           GDLSQLD LFELDGSLR+GHWQVALKARQPALAKAIGDISLAGASYV+KV MKEASGDRT
Sbjct: 121 GDLSQLDQLFELDGSLRDGHWQVALKARQPALAKAIGDISLAGASYVDKVSMKEASGDRT 180

Query: 181 EIRFSAIKTGEGAMTADEGALFD 203
           +I FSAIKTGEGAMTA+EGALFD
Sbjct: 181 DISFSAIKTGEGAMTAEEGALFD 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 528,237
Number of extensions: 19792
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)