BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0231.p
         (660 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313006|ref|YP_003777098.1| exporter protein [Herbaspirillu...  1000   0.0  

>gi|300313006|ref|YP_003777098.1| exporter protein [Herbaspirillum
           seropedicae SmR1]
          Length = 810

 Score = 1000 bits (2585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/660 (90%), Positives = 621/660 (94%)

Query: 1   LSGLYGAFGGPRLGAWQDDPFGLFSDWVQERARETPVRPRDGQLFVERDGVSYALLLLEL 60
           L GLYGAFGGPRLGAWQDDPFGLF DWVQERARETPVRPRDG LFVERDGVSYALLLLEL
Sbjct: 151 LGGLYGAFGGPRLGAWQDDPFGLFGDWVQERARETPVRPRDGMLFVERDGVSYALLLLEL 210

Query: 61  KAPAFSMQAQEQIVPLLAQARQAARSQASEVITGGVVLHAAAASAQAGSESATIGAGSLL 120
           KAPAFSMQAQEQ+VPLLAQAR+AAR+QA EV++GGVVLHAAAASAQA SESATIGAGSLL
Sbjct: 211 KAPAFSMQAQEQVVPLLAQARRAARTQAGEVVSGGVVLHAAAASAQASSESATIGAGSLL 270

Query: 121 GILLLMWLSFRSLKPILYIALSIAVGCLGALSVSMLLFGKIHLLTLVFGASLIGIAQDYG 180
           GILLLMWL+FRSLKPILYIALSIAVGCLGALSVSML+FGKIHLLTLVFGASLIGIAQDYG
Sbjct: 271 GILLLMWLTFRSLKPILYIALSIAVGCLGALSVSMLVFGKIHLLTLVFGASLIGIAQDYG 330

Query: 181 IYFLCARLAAPATQDSTTLLRRLLPGLALMLLAALIGYLGMALTPFPGLQQMAVFSALGL 240
           IYFLCARLAAPATQDS TLLRRLLPGLALMLLAALIGYLGMALTPFPGLQQMAVFSALGL
Sbjct: 331 IYFLCARLAAPATQDSATLLRRLLPGLALMLLAALIGYLGMALTPFPGLQQMAVFSALGL 390

Query: 241 VFAWLTVACWFPRLIGPHSLRASAQAQRFGQSIARWPDLLGGVAWHLVLPAAVALIGLAI 300
           VFAWLTVACWFP+LIGP +L A+ +AQ FGQSIARWPDLLGG AWHLVLPAAVALIGLAI
Sbjct: 391 VFAWLTVACWFPQLIGPQTLCATPRAQGFGQSIARWPDLLGGFAWHLVLPAAVALIGLAI 450

Query: 301 AGITRLHSSDDLRALQNSPPALLQDQIRISQLLDMAAPVQFYLVRGASPEAVLRQEEALR 360
           AG+ RLHSSDD+RALQ SPP LLQDQ+RISQLL++AAPVQFYLVRGAS EAVL+QEEALR
Sbjct: 451 AGVARLHSSDDIRALQKSPPELLQDQMRISQLLELAAPVQFYLVRGASAEAVLQQEEALR 510

Query: 361 EKLQPLVQGKLISGVQAVSNWVPSQQRQQDNLTLLRRALLEPQAATPDAVTLTAQAIDES 420
           EKLQ LVQ KLI+GVQAVSNW PSQQRQQDNL LLRRALLEPQ  +PDAVTLTAQAI ES
Sbjct: 511 EKLQALVQRKLITGVQAVSNWAPSQQRQQDNLALLRRALLEPQGESPDAVTLTAQAIGES 570

Query: 421 PQWAQALRQRMLDKAQPLTPAEFLATPAGTASRHLWLGQVDGQFASIVALRGLSDYRQLD 480
           PQWAQALRQRMLDK QP+TP EFLATPAG ASRHLWLGQVDGQFASIVALRGL+DYRQL 
Sbjct: 571 PQWAQALRQRMLDKTQPITPEEFLATPAGAASRHLWLGQVDGQFASIVALRGLTDYRQLG 630

Query: 481 RLAAVADGLPGVQWVDKVGDISAVLRQYRITMGWALLCAYAAIFALLALRYRRRAWRALA 540
           +LAAVA+G+PGVQWVDKVG+IS+VLRQYRI MGWALLCAYAAIFALLALRYRRRAWRALA
Sbjct: 631 QLAAVAEGMPGVQWVDKVGEISSVLRQYRIYMGWALLCAYAAIFALLALRYRRRAWRALA 690

Query: 541 PPLLASLLTLGLFGWLGLPLQLFHVLAGLLVLGLGVDYGIFLLEASGHQRPHAWLTVGLS 600
           PPLLASLLTLGLFGWLG PLQLFHVLAGLLVLGLGVDYGIFLLE+S  QRPHAWLTV LS
Sbjct: 691 PPLLASLLTLGLFGWLGQPLQLFHVLAGLLVLGLGVDYGIFLLESSRDQRPHAWLTVALS 750

Query: 601 AASALLSFGLLALSHSPPLHAFGLTMLCGMLLVWLLAPLFTHPGRDPLLVQRAQPDKESA 660
           AASALLSFGLLALSHSPPLHAFGLTMLCGMLLVWLLAPLFTHPG        AQPDKESA
Sbjct: 751 AASALLSFGLLALSHSPPLHAFGLTMLCGMLLVWLLAPLFTHPGPAAHATPDAQPDKESA 810


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,719,217
Number of extensions: 63377
Number of successful extensions: 358
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 569
Effective length of database: 1,188,985
Effective search space: 676532465
Effective search space used: 676532465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 134 (56.2 bits)