BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0229.p (356 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein... 633 0.0 gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 120 1e-28 gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 105 8e-24 >gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 399 Score = 633 bits (1633), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/355 (92%), Positives = 342/355 (96%) Query: 2 PLALGAVTDDTLLPADDHLPLRERSRNNRLALAALERIRPQVDAAIARYGAERIGIVLGT 61 PLALGAV DDT LP DDHLPLRERSRNNRLALAAL+RIR QVDAAIARYGAERIGIVLGT Sbjct: 45 PLALGAVPDDTRLPEDDHLPLRERSRNNRLALAALQRIRVQVDAAIARYGAERIGIVLGT 104 Query: 62 STSGIAEGETAFAARAASGSFPPGYHYGQQELGSPATALQMTLGTSGPAYVQSSACASSG 121 STSGIAEGE AFAARAASGSFPPGYHYGQQELGSPATALQ+TLGT+GPAYVQSSACASSG Sbjct: 105 STSGIAEGEAAFAARAASGSFPPGYHYGQQELGSPATALQLTLGTTGPAYVQSSACASSG 164 Query: 122 KAIASAARLLNMGLCDAVLCGGVDTLCEFTISGFTALESVSSEPCNPLSLHRCGINIGEG 181 KAIASAARLLNMGLCDAVLCGGVDTLC+FTI+GFTALESVS++ CNPLSLHR GINIGEG Sbjct: 165 KAIASAARLLNMGLCDAVLCGGVDTLCQFTIAGFTALESVSAQRCNPLSLHRQGINIGEG 224 Query: 182 AALFLLTREPAPVRLSGWGESSDAYHISAPDPEGRGAQLAIGQALRRAGLNAAQIDYINL 241 AALFLLTREPA V+LSGWGESSDAYHISAPDPEGRGAQLAIGQALRRAGL A+QIDYINL Sbjct: 225 AALFLLTREPAAVQLSGWGESSDAYHISAPDPEGRGAQLAIGQALRRAGLTASQIDYINL 284 Query: 242 HGTATAQNDAMESRVVQALFGLEVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDDNPQGL 301 HGTAT QNDAMES+VVQALFGLEVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDDNP GL Sbjct: 285 HGTATPQNDAMESKVVQALFGLEVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDDNPDGL 344 Query: 302 LPPHLWDGVADPALPPLAPVKVGQRLGRPLQHVLSNSFAFGGSNVALVFSREENA 356 LPPHLWDGVADPALP LAPV+VGQRLGRPL+HVLSNSFAFGGSNVALVFSR ENA Sbjct: 345 LPPHLWDGVADPALPALAPVQVGQRLGRPLRHVLSNSFAFGGSNVALVFSRGENA 399 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 126/263 (47%), Gaps = 21/263 (7%) Query: 104 LGTSGPAYVQSSACASSGKAIASAARLLNMGLCDAVLCGGVDTLCEFTISGFTALESVSS 163 G +G SSAC S + I A + G A++ GG + LC + F L + S Sbjct: 157 FGITGRIITTSSACTSGSQGIGYAYETIRSGRQLAMVAGGAEELCATEAAVFDTLYATSV 216 Query: 164 EPC------NPLSLHRCGINIGEGA-ALFLLTREPAPVR-------LSGWGESSDAYHIS 209 +P R G+ +GEGA +L L E A R + G+G +SD H++ Sbjct: 217 RNDTPQVTPSPFDRDRDGLVLGEGAGSLILEDLEHAQARGAHIHAEIVGFGTNSDGAHVT 276 Query: 210 APDPEGRGAQLAIGQALRRAGLNAAQIDYINLHGTATAQNDAMESRVVQALFGLEVPVSS 269 +P Q AI AL AGL A+ I YIN HGT T Q D E++ +FG P+SS Sbjct: 277 --NPNAATMQAAIQMALDDAGLPASAIGYINAHGTGTRQGDVAETQATARVFGKATPISS 334 Query: 270 TKPFTGHTLGAASAIEAGLCWLLMQDDNPQGLLPPHLWDGVADPALPPLAPVKVGQRLGR 329 K + GHTLGA A+EA L +M+ G P + DP L + G Sbjct: 335 LKSYMGHTLGACGALEAWLSIEMMR----HGWFAPTINLQHPDPDCGELDYL-TGNGRAL 389 Query: 330 PLQHVLSNSFAFGGSNVALVFSR 352 ++V+SN+FAFGG N +L+F R Sbjct: 390 ECEYVMSNNFAFGGINTSLIFKR 412 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 107/363 (29%), Positives = 165/363 (45%), Gaps = 40/363 (11%) Query: 17 DDHLPLRE-RSRNNRLALAALERIRPQVDA--AIARYGAERIGIVLGTSTSGIAEGETAF 73 +D++P +E R + + I+ D+ + AERIG+++G+ G+ E Sbjct: 63 EDYIPAKEARHMDTFIHFGMAAGIQAMQDSGLTVTDENAERIGVMIGSGIGGLPLIEETH 122 Query: 74 AA------RAASGSFPPGYHYGQQELGSPATALQMTLGTSGPAYVQSSACASSGKAIASA 127 A R S F P + + L + G GP +AC + I SA Sbjct: 123 AELTNRGPRRISPFFIPA-----SIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSA 177 Query: 128 ARLLNMGLCDAVLCGGVDT-LCEFTISGFT---ALESVSSEPCN---PLSLHRCGINIGE 180 AR++ G D ++ GG ++ + I GF AL + + +P P R G +GE Sbjct: 178 ARMIMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGE 237 Query: 181 GAALFLLTR-EPAPVR-------LSGWGESSDAYHISAPDPEGRGAQLAIGQALRRAGLN 232 GA + +L E A R L G+G S DAYH++AP+ +G + + ALR AG+N Sbjct: 238 GAGVMVLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDG--PRRCVLNALRDAGVN 295 Query: 233 AAQIDYINLHGTATAQNDAMESRVVQALFG---LEVPVSSTKPFTGHTLGAASAIEAGLC 289 ++ Y+N HGT+T D ES ++A FG ++ V+STK TGH LG A +E L Sbjct: 296 PDEVQYLNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLT 355 Query: 290 WLLMQDDNPQGLLPPHLWDGVADPALPPLAPVKVGQRLGRPLQHVLSNSFAFGGSNVALV 349 L + + + PP + DP Q + + NSF FGG+N LV Sbjct: 356 VLAVHNQ----VSPPTMNIFNQDPECD--LDYCANQARDMKIDIAVKNSFGFGGTNGTLV 409 Query: 350 FSR 352 + Sbjct: 410 IGK 412 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,078,542 Number of extensions: 43581 Number of successful extensions: 211 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 204 Number of HSP's successfully gapped: 3 Length of query: 356 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 270 Effective length of database: 1,212,660 Effective search space: 327418200 Effective search space used: 327418200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)