BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0226.p (414 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 808 0.0 gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 200 2e-52 gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein... 119 5e-28 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/414 (93%), Positives = 401/414 (96%) Query: 1 MTRPLNERRVVVTGMAGISPIGTDWNSALAHLQTLRNAVQRMPGWDEYIGLHTRLGAPAV 60 MTR ERRVVVTGMAGISPIGTDWNSALA L++ NAVQRMPGWDEY+GLHTRLGAPA Sbjct: 1 MTRARTERRVVVTGMAGISPIGTDWNSALAQLKSGSNAVQRMPGWDEYVGLHTRLGAPAA 60 Query: 61 EFSLSERYNRKTTRSMGRVALMATRASEWALADAGLLEDPLLKSGQLGIAYGSSAGTPNA 120 EFSLSERYNRKTTRSMGRVALMATRASEWALADAGLL+DPLLKSGQLGIAYGSSAGTPNA Sbjct: 61 EFSLSERYNRKTTRSMGRVALMATRASEWALADAGLLDDPLLKSGQLGIAYGSSAGTPNA 120 Query: 121 IADFAMMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGYA 180 IADFAMMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGYA Sbjct: 121 IADFAMMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGYA 180 Query: 181 YETIRSARQVAMVAGGSEELCATEAAVFDTLYATSVRNDTPQLTPSPFDRDRDGLVLGEG 240 YETIRS RQ+AMVAGG+EELCATEAAVFDTLYATSVRNDTPQ+TPSPFDRDRDGLVLGEG Sbjct: 181 YETIRSGRQLAMVAGGAEELCATEAAVFDTLYATSVRNDTPQVTPSPFDRDRDGLVLGEG 240 Query: 241 AGSLILEDLEHAQARGARIYAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAGLPPSA 300 AGSLILEDLEHAQARGA I+AEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAGLP SA Sbjct: 241 AGSLILEDLEHAQARGAHIHAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAGLPASA 300 Query: 301 IGYINAHGTGTRQGDMAETQATARVFGNGTPISSLKSYMGHTLGACGALEAWLSIEMMRH 360 IGYINAHGTGTRQGD+AETQATARVFG TPISSLKSYMGHTLGACGALEAWLSIEMMRH Sbjct: 301 IGYINAHGTGTRQGDVAETQATARVFGKATPISSLKSYMGHTLGACGALEAWLSIEMMRH 360 Query: 361 GWFAPTINLQQPDPECGELDYLTGDGRALQCEYVMSNNFAFGGINTSLIFKRWP 414 GWFAPTINLQ PDP+CGELDYLTG+GRAL+CEYVMSNNFAFGGINTSLIFKRWP Sbjct: 361 GWFAPTINLQHPDPDCGELDYLTGNGRALECEYVMSNNFAFGGINTSLIFKRWP 414 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 200 bits (509), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 137/411 (33%), Positives = 208/411 (50%), Gaps = 9/411 (2%) Query: 7 ERRVVVTGMAGISPIGTDWNSALAHLQTLRNAVQRMPGWDEYIGLHTRLGAPAVEFSLSE 66 ERRVV+TG+ ISP+G + + ++ ++ + + +D T F++ + Sbjct: 6 ERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDA-TPFTTHFAGEVKGFNIED 64 Query: 67 RYNRKTTRSMGRVALMATRASEWALADAGL-LEDPLLKSGQLGIAYGSSAGTPNAIADFA 125 K R M A A+ D+GL + D + ++G+ GS G I + Sbjct: 65 YIPAKEARHMDTFIHFGMAAGIQAMQDSGLTVTDE--NAERIGVMIGSGIGGLPLIEETH 122 Query: 126 MMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGYAYETIR 185 + R I+ + + N+ + FG+ G + +ACT+G IG A I Sbjct: 123 AELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARMIM 182 Query: 186 SARQVAMVAGGSEE-LCATEAAVFDTLYATSVRNDTPQLTPSPFDRDRDGLVLGEGAGSL 244 MVAGG+E + F + A S RND P P+D+DRDG VLGEGAG + Sbjct: 183 YGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAGVM 242 Query: 245 ILEDLEHAQARGARIYAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAGLPPSAIGYI 304 +LE+ EHA+ARGA+IYAE++GFG + D H+T PN + + AL DAG+ P + Y+ Sbjct: 243 VLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGPRRCVLNALRDAGVNPDEVQYL 302 Query: 305 NAHGTGTRQGDMAETQATARVFGN---GTPISSLKSYMGHTLGACGALEAWLSIEMMRHG 361 NAHGT T GD E+ A FG+ ++S KS GH LG G LE L++ + + Sbjct: 303 NAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVHNQ 362 Query: 362 WFAPTINLQQPDPECGELDYLTGDGRALQCEYVMSNNFAFGGINTSLIFKR 412 PT+N+ DPEC +LDY R ++ + + N+F FGG N +L+ + Sbjct: 363 VSPPTMNIFNQDPEC-DLDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGK 412 >gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 399 Score = 119 bits (298), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 122/263 (46%), Gaps = 21/263 (7%) Query: 157 FGITGRIITTSSACTSGSQGIGYAYETIRSARQVAMVAGGSEELCATEAAVFDTLYATSV 216 G TG SSAC S + I A + A++ GG + LC A F L + S Sbjct: 147 LGTTGPAYVQSSACASSGKAIASAARLLNMGLCDAVLCGGVDTLCQFTIAGFTALESVSA 206 Query: 217 RNDTPQLTPSPFDRDRDGLVLGEGAGSLILEDLEHAQARGARIYAEIVGFGTNSDGAHVT 276 + +P R G+ +GEGA +L A ++ G+G +SD H++ Sbjct: 207 QRC------NPLSLHRQGINIGEGAALFLLTREPAA--------VQLSGWGESSDAYHIS 252 Query: 277 --NPNAATMQAAIQMALDDAGLPPSAIGYINAHGTGTRQGDMAETQATARVFGNGTPISS 334 +P Q AI AL AGL S I YIN HGT T Q D E++ +FG P+SS Sbjct: 253 APDPEGRGAQLAIGQALRRAGLTASQIDYINLHGTATPQNDAMESKVVQALFGLEVPVSS 312 Query: 335 LKSYMGHTLGACGALEAWLSIEMMR----HGWFAPTINLQQPDPECGELDYL-TGDGRAL 389 K + GHTLGA A+EA L +M+ G P + DP L + G Sbjct: 313 TKPFTGHTLGAASAIEAGLCWLLMQDDNPDGLLPPHLWDGVADPALPALAPVQVGQRLGR 372 Query: 390 QCEYVMSNNFAFGGINTSLIFKR 412 +V+SN+FAFGG N +L+F R Sbjct: 373 PLRHVLSNSFAFGGSNVALVFSR 395 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,380,049 Number of extensions: 60827 Number of successful extensions: 210 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 3 Length of query: 414 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 326 Effective length of database: 1,203,190 Effective search space: 392239940 Effective search space used: 392239940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)