BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0225.p
         (147 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313011|ref|YP_003777103.1| excinuclease ATPase subunit [He...   271   1e-74

>gi|300313011|ref|YP_003777103.1| excinuclease ATPase subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 147

 Score =  271 bits (693), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 129/147 (87%), Positives = 138/147 (93%)

Query: 1   MKTISITLALTLALAAALPAQARDTKHLLPLDSTADMKDKEGILDGSVKFYFAGQAHPAV 60
           MKT S+ LA+TLAL+AALPAQARDTKHLLPLDS + MKDKEG+LDGSVKFYFAGQ HPAV
Sbjct: 1   MKTSSLALAVTLALSAALPAQARDTKHLLPLDSASSMKDKEGVLDGSVKFYFAGQPHPAV 60

Query: 61  LEKIATDVTNQKTNAVGKSDEEACKWVFLSALVQLHKKARELGGNGVVNIVSYYKKNEMA 120
           LEKI+TDVTN KTNA GKSDEEACKW FLS LVQLHKKA+ELGGNGVVNIVSYYKKNEMA
Sbjct: 61  LEKISTDVTNMKTNAFGKSDEEACKWAFLSGLVQLHKKAKELGGNGVVNIVSYYKKNEMA 120

Query: 121 SATQFECHAGATMAGVALKGDIVKLGQ 147
           SAT+FECHAGATMAGVALKGDIVKLG+
Sbjct: 121 SATEFECHAGATMAGVALKGDIVKLGK 147


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 376,769
Number of extensions: 13268
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,255,275
Effective search space: 87869250
Effective search space used: 87869250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)