BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0221.p (631 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 248 2e-66 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 246 3e-66 gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I p... 243 4e-65 gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis pro... 243 5e-65 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 241 1e-64 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 248 bits (632), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 155/326 (47%), Positives = 217/326 (66%), Gaps = 10/326 (3%) Query: 294 LTLAVIVVVILLASYALAGFYIATKKEIASLSHAV---ENVALGNLEVRIPFHGNDEIGK 350 ++A ++ I+L Y+ + + L+ AV ENVA G+L RI H DE G+ Sbjct: 198 CSMAAVLAAIILG-------YLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSRDETGQ 250 Query: 351 LGNAFNRMNDSLCEVIAGIRSSAHLVSLASKEIAQGNADLSERTEAQARSVQRTTASMDL 410 L A +MND+L E+++G+R ++ AS EIA GN DLS RTE QA S++ T ++M+ Sbjct: 251 LMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEE 310 Query: 411 FNDIVRNNADEAARANRLADSASAFATRGGEVVSDIVDTMTAISASSDQIANITGVIDSL 470 VR NAD A +AN++A SAS A +GG++V +V TM I+ SS +I +I GVID + Sbjct: 311 MTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGI 370 Query: 471 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRMLAQRSATAAREIKALIQESTSQVNAG 530 AFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA AA+EIKALI +S +V G Sbjct: 371 AFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGG 430 Query: 531 RLKVDGAAQSMSDIGASIAEVAQIISKFASSSMSQRSDIEATSSELAAIESMTQENAALV 590 V A +M + +S+ V I+++ +++S Q S IE + + ++ TQ+NAALV Sbjct: 431 SALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALV 490 Query: 591 EQAAAAAESLKIQAHLMAESVAIFKI 616 EQAAAAA+S++ QA + +S++IFK+ Sbjct: 491 EQAAAAAKSMQEQAVRLTQSISIFKL 516 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 246 bits (629), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 156/342 (45%), Positives = 223/342 (65%), Gaps = 8/342 (2%) Query: 281 LSQRKQELTTRRNLTLAVIV----VVILLASYALAGFYIATK--KEIASLSHAVENVALG 334 L +R +E R++T ++ + ++LA L +++A + +A VA G Sbjct: 177 LGERAEEAAALRSVTSTTLIGGGAIALMLA--VLLAWWLANNITRPLALAVQLARRVASG 234 Query: 335 NLEVRIPFHGNDEIGKLGNAFNRMNDSLCEVIAGIRSSAHLVSLASKEIAQGNADLSERT 394 +L RI DE G L A MN+SL +++G+R +++ AS EIA GN DLS RT Sbjct: 235 DLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRT 294 Query: 395 EAQARSVQRTTASMDLFNDIVRNNADEAARANRLADSASAFATRGGEVVSDIVDTMTAIS 454 E QA S++ T +SM+ V+ N A ANR+A +AS A+ GG VV+ +VDTM I+ Sbjct: 295 EQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEIN 354 Query: 455 ASSDQIANITGVIDSLAFQTNILALNAAVEAARAGEQGRGFAVVASEVRMLAQRSATAAR 514 SS +I +I VID +AFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AA+ Sbjct: 355 DSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK 414 Query: 515 EIKALIQESTSQVNAGRLKVDGAAQSMSDIGASIAEVAQIISKFASSSMSQRSDIEATSS 574 EIKALI +S ++V +G L V+ A +M +I S+ V +I++ +++ QRS IE S Sbjct: 415 EIKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQ 474 Query: 575 ELAAIESMTQENAALVEQAAAAAESLKIQAHLMAESVAIFKI 616 + ++ +TQ+NAALVEQAAAA++SL+ QA +A++V++F++ Sbjct: 475 AVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRL 516 >gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 646 Score = 243 bits (619), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 199/557 (35%), Positives = 290/557 (52%), Gaps = 46/557 (8%) Query: 90 DLARSLSEIAKSW----NDIKAKQAPGPKDDFTAHERLIALTQSLKNDASNKSGVRLDQE 145 +L SL +A W + +K G + + H LIAL L + +N SG+ L+ E Sbjct: 109 ELMESLERVASQWRALAQAVSSKAITGAQSNLQ-HAELIALELDLIDQLANSSGLALEAE 167 Query: 146 INTHHLALTLLDHVPAVSDAIAILAGRGGSYIDTGLMEPNEELVLASLVSTGKHDLVQLG 205 ++ +++ +P +++A+ RG + G E L +L + Sbjct: 168 AALFYVQRAVMNELPQLTEALGQTRARGAVMLGRGQASAEERARLENLADRARRSYDSAR 227 Query: 206 EQLKTLLASVPEWSGRIGPYANQMNVASAFFERTSNEVLKSVDQTSGEQFSNAGVAAIAE 265 + L TL A GR AN ER E LK+ ++ G + +++ AI Sbjct: 228 KSL-TLAA------GRHALPAN--------LERARAEALKAAEE--GFKLADS---AIIR 267 Query: 266 MQKLSGP-------LSSLLDEQLSQRKQELTTRRNLTLAVIVVV--------------IL 304 LS P ++ ++D Q R+ A I V Sbjct: 268 ADNLSMPAPEWVATMTRIIDTQFVLVNASFDLMRDELQAKIPRVRNELLMLCALLGLLAA 327 Query: 305 LASYALAGFYIATKKEIASLSHAVENVALGNLEVRIPFHGNDEIGKLGNAFNRMNDSLCE 364 A + + AT I E ++ G+L + +G+DE+ +L A M L Sbjct: 328 AALWVMVAITRATTSAINDAVRLTEAISAGDLTQHVQINGSDEVARLLTAMQAMTARLST 387 Query: 365 VIAGIRSSAHLVSLASKEIAQGNADLSERTEAQARSVQRTTASMDLFNDIVRNNADEAAR 424 V++ +RS++ V+ AS +IAQGNADLS+RTE QA ++Q+T ASM+ V NAD A + Sbjct: 388 VVSSVRSNSESVATASAQIAQGNADLSKRTEEQASALQQTAASMEELGSTVAQNADGARQ 447 Query: 425 ANRLADSASAFATRGGEVVSDIVDTMTAISASSDQIANITGVIDSLAFQTNILALNAAVE 484 A LA A+ A +GG+VV +V TM + ASSD+I++I GVID +AFQTNILALNAAVE Sbjct: 448 AGDLAREAAHVAGQGGQVVQQVVQTMQGLHASSDRISDIIGVIDGIAFQTNILALNAAVE 507 Query: 485 AARAGEQGRGFAVVASEVRMLAQRSATAAREIKALIQESTSQVNAGRLKVDGAAQSMSDI 544 AARAGEQGRGFAVVA+EVR LAQRSATAAREIK LI S QV G D A ++M +I Sbjct: 508 AARAGEQGRGFAVVATEVRSLAQRSATAAREIKELITASVEQVGQGTQLADQAGKTMEEI 567 Query: 545 GASIAEVAQIISKFASSSMSQRSDIEATSSELAAIESMTQENAALVEQAAAAAESLKIQA 604 SI V+ I+ +++ Q + I + +++ TQ+NAALVE++AAAA SL QA Sbjct: 568 VTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDTTTQQNAALVEESAAAAISLSGQA 627 Query: 605 HLMAESVAIFKIGSSTV 621 + ++VA+F++G V Sbjct: 628 RELVQAVAVFRLGQRAV 644 >gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 507 Score = 243 bits (619), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 211/530 (39%), Positives = 296/530 (55%), Gaps = 61/530 (11%) Query: 94 SLSEIAKSWNDIKAKQAPGPKDDFTAHERLIALTQSLKNDASNKSGVRLDQEINTHHLAL 153 +L++I + WND K D+ A + I L ++N K+ V ++ + H LA Sbjct: 28 TLTQIGRHWNDFSGTVLG--KQDY-ATQGYIKLGDGVQN---FKNYVVRGKDYDRHFLA- 80 Query: 154 TLLDHVPAVSDAIAILAGRGGSYIDTGLMEPNEELVLASLVSTGKHDLVQLGEQLKTLLA 213 D DAI L + Y G+ P EE +L +S G+ + + LA Sbjct: 81 ---DM-----DAIVRLMEQ---YRKLGVDNPKEEALLEK-ISNGER-------RYREALA 121 Query: 214 SVPEWSGRIGPYANQMNVASAFFERTSNEV---LKSVDQTSGEQFSNAGVAAIAEMQKLS 270 A M A A + +EV + D+ G FS G+ AIA S Sbjct: 122 K-----------AQAMKAAGA----SPSEVDAAISGADKVLGAGFS--GLLAIARENAGS 164 Query: 271 GPLSSLLDEQLSQRKQELTTRRNLTLAVIVVVILLASYALAGFYIATKKEIASLSHAV-- 328 EQ+S + ++L+LAV +V++LA L +AT+ + AV Sbjct: 165 ------TGEQISS---AIGAGKSLSLAVGALVVILA---LVLAVLATRSITQPMREAVRI 212 Query: 329 -ENVALGNLEVRIPFHGNDEIGKLGNAFNRMNDSLCEVIAGIRSSAHLVSLASKEIAQGN 387 + VA G+L RI DE G+L A MN SL +V+ G+R + + AS +IA GN Sbjct: 213 AKTVAAGDLGSRIVVTRKDETGELLQALKEMNASLQKVVGGVREGSDTIVTASTQIAGGN 272 Query: 388 ADLSERTEAQARSVQRTTASMDLFNDIVRNNADEAARANRLADSASAFATRGGEVVSDIV 447 DLS RTE QA S+++T A+M+ VR NAD A +AN +A S S A+R G VVSD+V Sbjct: 273 LDLSARTEEQASSLEQTAAAMEEITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVV 332 Query: 448 DTMTAISASSDQIANITGVIDSLAFQTNILALNAAVEAARAGEQGRGFAVVASEVRMLAQ 507 TM I AS+ +I I VID +AFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQ Sbjct: 333 GTMDEIQASAREIEEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQ 392 Query: 508 RSATAAREIKALIQESTSQVNAGRLKVDGAAQSMSDIGASIAEVAQIISKFASSSMSQRS 567 RSATAA+EIK LI S ++ AG V A ++ ++ S+ +V QI+S+ +++S Q S Sbjct: 393 RSATAAKEIKDLIGNSVEKIAAGSKLVQAAGATIEELVRSVRDVTQIMSEISAASGEQES 452 Query: 568 DIEATSSELAAIESMTQENAALVEQAAAAAESLKIQAHLMAESVAIFKIG 617 IE + +A ++++TQ+NAALVE+AAAA E+LK QA +AESV++F++G Sbjct: 453 GIEQVNQAIAQMDTVTQQNAALVEEAAAATEALKAQARRLAESVSVFRLG 502 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 241 bits (615), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 166/361 (45%), Positives = 231/361 (63%), Gaps = 12/361 (3%) Query: 259 GVAAIAEMQKLSGPLSSLLDEQLSQRKQELTTRRNLTLAVIVVVILLASYALAGFYIATK 318 GV A+ QK ++D+ + ++ + R++ LA+ + I+L + ALA ++ T+ Sbjct: 160 GVLRYADFQK------QVIDQTAAAINRDYRSGRSMLLALGAIEIVLGA-ALA--WLLTR 210 Query: 319 KEIASLSHAV---ENVALGNLEVRIPFHGNDEIGKLGNAFNRMNDSLCEVIAGIRSSAHL 375 L+ AV E VA G+L RI DE GKL A MN +L +++ +R Sbjct: 211 SITRPLNQAVTIAETVAAGDLTSRIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTET 270 Query: 376 VSLASKEIAQGNADLSERTEAQARSVQRTTASMDLFNDIVRNNADEAARANRLADSASAF 435 ++ AS+EIA GN DLS RTEAQA S++ T ++M+ V+ NAD A +AN LA SAS Sbjct: 271 INTASREIATGNLDLSARTEAQAGSLEETASAMEQLTSTVKQNADNARQANELAASASQV 330 Query: 436 ATRGGEVVSDIVDTMTAISASSDQIANITGVIDSLAFQTNILALNAAVEAARAGEQGRGF 495 AT+GG VV +V TM AI ASS +IA+I GVID +AFQTNILALNAAVEAARAGEQGRGF Sbjct: 331 ATQGGAVVDQVVATMGAIHASSQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGF 390 Query: 496 AVVASEVRMLAQRSATAAREIKALIQESTSQVNAGRLKVDGAAQSMSDIGASIAEVAQII 555 AVVASEVR LAQRSA+AA+EIK LI +S +V+ G V A +M ++ S+A V ++ Sbjct: 391 AVVASEVRSLAQRSASAAKEIKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVV 450 Query: 556 SKFASSSMSQRSDIEATSSELAAIESMTQENAALVEQAAAAAESLKIQAHLMAESVAIFK 615 + +S Q IE + + I+ TQ+NAALVEQAAAAA S++ QA + ++V++F+ Sbjct: 451 REITLASQEQSDGIEQVNLAITHIDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFR 510 Query: 616 I 616 + Sbjct: 511 L 511 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.126 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,446,498 Number of extensions: 49605 Number of successful extensions: 359 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 272 Number of HSP's successfully gapped: 70 Length of query: 631 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 540 Effective length of database: 1,188,985 Effective search space: 642051900 Effective search space used: 642051900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)