BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0218.p (305 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313017|ref|YP_003777109.1| LysR family transcription regul... 524 e-150 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 218 6e-58 gi|300311458|ref|YP_003775550.1| LysR family transcription regul... 199 3e-52 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 187 1e-48 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 181 8e-47 >gi|300313017|ref|YP_003777109.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 524 bits (1350), Expect = e-150, Method: Compositional matrix adjust. Identities = 260/305 (85%), Positives = 283/305 (92%) Query: 1 MDRWNQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 60 MDRW+QFELFVQVAELGSLSRAAEALG+SNAAASR+LAALE+RLGARLVERSTRRLGLS+ Sbjct: 1 MDRWSQFELFVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSR 60 Query: 61 AGEAFYRHCKAALTQMKEAEALVNANSVAPGGLLRVTSSLSFCMKHISPLLPRFHRLYPD 120 AGE FYRHCKAALTQMKEAE VNA S AP G LR+TSSLSFCMKHISPLLPRFH+ YP+ Sbjct: 61 AGEDFYRHCKAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPE 120 Query: 121 ITLEVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLAATRRILAASPGYLAARGVPR 180 + LEV+AANRY+DLLDS ID+AIRTREFEPD+NIAVRRLA TRRILAA+PGYLAARG PR Sbjct: 121 VRLEVIAANRYMDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPR 180 Query: 181 ALDDLAAHDLLVYSHSNHPNLLHFTHRDGRERQLDITALMQSNDGQIIRAAALEGLGILI 240 LDDLA HDLLVYSH+ PN LH + RDG +R L+I +LMQSNDGQIIRAAALEGLGILI Sbjct: 181 TLDDLAQHDLLVYSHAKEPNRLHLSGRDGSQRTLEIKSLMQSNDGQIIRAAALEGLGILI 240 Query: 241 QPNYIIYDDVVAGRLVPVLDEWDLPRLTINIAYQGRKHLPARVRVFVDFLLQHFEEMDYE 300 QPNYIIYDD+VAGRLVPVLDEWDLPRL+INIAYQGRKHLPARVRVF+DFL+QHFEEMDYE Sbjct: 241 QPNYIIYDDIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVRVFIDFLVQHFEEMDYE 300 Query: 301 RKWTR 305 RKWTR Sbjct: 301 RKWTR 305 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 218 bits (554), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 113/299 (37%), Positives = 184/299 (61%), Gaps = 2/299 (0%) Query: 1 MDRWNQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 60 M++ + E F+ VA+LGS +AAEALG+S AA SR++ LE RLG+RL++R+TRRL L++ Sbjct: 1 MNKLREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 Query: 61 AGEAFYRHCKAALTQMKEAEALVNANSVAPGGLLRVTSSLSFCMKHISPLLPRFHRLYPD 120 AG + CK + ++EA+ L+++ S P GLLR+ + L+F + H++PL P F +P+ Sbjct: 61 AGALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPE 120 Query: 121 ITLEVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLAATRRILAASPGYLAARGVPR 180 I+L++ ++R VD++D G D+AIR DS + R+L +T + ASP YL A G P Sbjct: 121 ISLDITLSDRIVDIIDEGYDMAIRIARLS-DSTLVHRKLTSTSLHVCASPAYLDAHGTPA 179 Query: 181 ALDDLAAHDLLVYSHSNHPNLLHFTHRDGRERQLDITALMQSNDGQIIRAAALEGLGILI 240 +LA H + YS++ + F +G + +++ + N+G AAL G+GI Sbjct: 180 HPHELAQHQTISYSYNQSKDEWQFNGPEG-PVSVRVSSRLHVNNGDSCVQAALGGIGITR 238 Query: 241 QPNYIIYDDVVAGRLVPVLDEWDLPRLTINIAYQGRKHLPARVRVFVDFLLQHFEEMDY 299 QP ++I + +G+LV +L ++ P L I Y R HLPA++R +DFL + F ++ + Sbjct: 239 QPTFMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEAFAQVHW 297 >gi|300311458|ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 199 bits (505), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 109/296 (36%), Positives = 176/296 (59%), Gaps = 5/296 (1%) Query: 1 MDRWNQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 60 MDR +F +V E GS RAAE L +SNA A+R +A LE LG RL+ RSTRRL L++ Sbjct: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 Query: 61 AGEAFYRHCKAALTQMKEAEALVNANSVAPGGLLRVTSSLSFCMKHISPLLPRFHRLYPD 120 AG+A+ + L ++ +AEALV+ + P G L + + F + +L + + YP+ Sbjct: 61 AGQAYLERVRMILAEVDDAEALVSLETKRPAGTLAIYCNAGFGQSQLGEMLSAYSQAYPE 120 Query: 121 ITLEVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLAATRRILAASPGYLAARGVPR 180 + L++ + R +DL++ GID+ + + D+++ VR+L R IL SP Y+A +G P Sbjct: 121 VALDISLSERSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCTSPAYIARQGAPE 180 Query: 181 ALDDLAAHDLLVYSHSNHPNLLHFTHRDGRERQLD--ITALMQSNDGQIIRAAALEGLGI 238 +DL+ H+ L +SH L H H + LD I + + SN G ++R AL G+GI Sbjct: 181 QPEDLSRHNCLNFSHE---YLRHHWHVNTNGGVLDVPIVSKVVSNSGVLLRDLALAGMGI 237 Query: 239 LIQPNYIIYDDVVAGRLVPVLDEWDLPRLTINIAYQGRKHLPARVRVFVDFLLQHF 294 +++P+Y + DD+ +GRLV VL +D+ ++ +++ Y R+ L A+VR F +F+ F Sbjct: 238 VLRPSYSLGDDLRSGRLVQVLPGFDMGQVIMSMVYPSRRLLSAKVRSFAEFISARF 293 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 187 bits (474), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 108/302 (35%), Positives = 167/302 (55%), Gaps = 2/302 (0%) Query: 1 MDRWNQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 60 MD++ Q F +VA GSLS AA A G++ A R L ALEERLG +L++R+TR++ L+ Sbjct: 1 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60 Query: 61 AGEAFYRHCKAALTQMKEAEALVNANSVAPGGLLRVTSSLSFCMKHISPLLPRFHRLYPD 120 G AF C+ L +++AE+ V+ S G L +++ F +H++PLLP F + D Sbjct: 61 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRD 120 Query: 121 ITLEVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLAATRRILAASPGYLAARGVPR 180 +TL + +R D++ GIDVAIR DSN+ +LA R++ A+P YL G P+ Sbjct: 121 VTLTLNLNDRIADVIGEGIDVAIRIATLT-DSNLVSVKLAENHRVIVAAPAYLRRHGTPQ 179 Query: 181 ALDDLAAHDLLVYSHSNHPNLLHFTHRDGRERQLDITALMQSNDGQIIRAAALEGLGILI 240 + D+L H+ L S + G+ + M NDG+++ AL G G+ Sbjct: 180 SPDELMRHNCLAMSSEGSQRGWTL-RQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAW 238 Query: 241 QPNYIIYDDVVAGRLVPVLDEWDLPRLTINIAYQGRKHLPARVRVFVDFLLQHFEEMDYE 300 + + + + AG LV VLD++ P +I + R+HLP R+R FVDFL + + DY Sbjct: 239 RSMWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYAQPDYW 298 Query: 301 RK 302 +K Sbjct: 299 KK 300 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 181 bits (458), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 102/295 (34%), Positives = 159/295 (53%), Gaps = 2/295 (0%) Query: 1 MDRWNQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 60 MD+ + FV V E GS A + G S A SR ++ LE+ LG RL+ R+TRRL L+ Sbjct: 1 MDKLQAMQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 60 Query: 61 AGEAFYRHCKAALTQMKEAEALVNANSVAPGGLLRVTSSLSFCMKHISPLLPRFHRLYPD 120 G ++ CK L +++ E+ V NS G LR+ + F ++ ++PL +F +P Sbjct: 61 EGRVYFARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPL 120 Query: 121 ITLEVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLAATRRILAASPGYLAARGVPR 180 ITL + ++R +DLL+ G D+AIR DS + R LA R I A+P +LA G P Sbjct: 121 ITLNITLSDRTIDLLEEGFDMAIRISALG-DSRMVARPLAPVRMIACAAPEFLARHGTPG 179 Query: 181 ALDDLAAHDLLVYSHSNHPNLLHFTHRDGRERQLDITALMQSNDGQIIRAAALEGLGILI 240 +L + + YS+ + F H G Q+ + + + N+G RA A+ G GI I Sbjct: 180 TPAELRDYPFISYSYRAGGDDWSFRHVHGDTCQVRVRSTVYVNNGATCRAMAIAGQGIAI 239 Query: 241 QPNYIIYDDVVAGRLVPVLDEWDL-PRLTINIAYQGRKHLPARVRVFVDFLLQHF 294 QP++I+ + AG+LV + + W +L ++ Y R HLP +V+ DFL++ F Sbjct: 240 QPDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLIEQF 294 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 802,089 Number of extensions: 29389 Number of successful extensions: 233 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 61 Length of query: 305 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 220 Effective length of database: 1,217,395 Effective search space: 267826900 Effective search space used: 267826900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)