BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0216.p
         (417 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313019|ref|YP_003777111.1| sodium:galactoside symporter pr...   573   e-165

>gi|300313019|ref|YP_003777111.1| sodium:galactoside symporter
           protein [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  573 bits (1478), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 320/401 (79%), Positives = 350/401 (87%)

Query: 14  RLSNAAYGLLGAPLAMAALPLFVQIPAYYASHVGVALAPLGWVLFAARLLDMLQDPLFGH 73
           R  +AAYGLLGAPLAMAALPLFVQIPAYYASHVG+ALAPLGWVLF ARLLDMLQDP+FGH
Sbjct: 7   RGQDAAYGLLGAPLAMAALPLFVQIPAYYASHVGLALAPLGWVLFGARLLDMLQDPVFGH 66

Query: 74  LLDRSAQRQKRWMAAAGVVLAVAFICLWKPPSTPQAAMVWLVAMLVLAYGAHSMLSIAYL 133
           LLDRSAQRQKRWMA AG VLAVAF+CLWKPP  PQAAM+WLVAMLVLAYGAHSMLSIAYL
Sbjct: 67  LLDRSAQRQKRWMAMAGAVLAVAFVCLWKPPHDPQAAMLWLVAMLVLAYGAHSMLSIAYL 126

Query: 134 SWGSRLPEQGMRAVPWREGAGLAGVILASVVPVGILAADPALIDQRITWYCLFFGAVLGV 193
           SW SRLPE+G+RAV WRE AGLAGVI+ASV+P  ILAA+ + ID RIT+YC  F A+LG+
Sbjct: 127 SWASRLPEKGLRAVAWREAAGLAGVIVASVIPAAILAAEASQIDARITFYCAGFAALLGL 186

Query: 194 ALLLLLRQPAPPMMAQGERWAVSLRGLWANRAFRSLLPPYLLNALSAAIPATLALFFIED 253
           ALL+LLRQ  PP  A G  W  +LRGLW   AFR+LLPPYLLNALSAAI ATLALFFIED
Sbjct: 187 ALLVLLRQNPPPPQADGHHWKSALRGLWETPAFRTLLPPYLLNALSAAIAATLALFFIED 246

Query: 254 QLQERALAGGFLAAYFGAAAVGLPLWSALARRFGTIACWRQAMLLSIAGFVGAVLLGPGD 313
           QLQ+  LAG FLAAYFGAAA+GLPLW AL+RR G +ACWR AMLLS+AGF+GA LLGPGD
Sbjct: 247 QLQQGRLAGLFLAAYFGAAALGLPLWGALSRRVGAVACWRYAMLLSVAGFIGAALLGPGD 306

Query: 314 RWAFLLVCLATGAALGADLLLPPVLLARVVTQRASVGAAFGILTMLGKLALALAGIALPL 373
           R AFL VCLATGAALGADLLLPPVLLAR V Q  +VG AFGILTMLGKLALAL+GIALPL
Sbjct: 307 RLAFLAVCLATGAALGADLLLPPVLLARSVRQAQAVGVAFGILTMLGKLALALSGIALPL 366

Query: 374 LSALDYQPGQGPSSSLPLVYAALPCVLKLAAFVALGRYGRQ 414
           L+ALDY+PGQGPS SLPLVYA LPC+LKL A+  LGRYGR+
Sbjct: 367 LAALDYRPGQGPSVSLPLVYALLPCLLKLLAWQVLGRYGRR 407


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,072,434
Number of extensions: 38685
Number of successful extensions: 213
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,203,190
Effective search space: 395849510
Effective search space used: 395849510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)