BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0215.p
         (524 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313020|ref|YP_003777112.1| deoxyribodipyrimidine photolyas...   871   0.0  

>gi|300313020|ref|YP_003777112.1| deoxyribodipyrimidine photolyase
           [Herbaspirillum seropedicae SmR1]
          Length = 519

 Score =  871 bits (2250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/522 (80%), Positives = 460/522 (88%), Gaps = 5/522 (0%)

Query: 4   KTDTHATP-ASTLRLILGDQLNAQHSWFDHADPEVVYVLMEVRSETDYVLHHAQKILAIF 62
             D  A P A+TLRLILGDQLN +HSWFD  D +VVY+LMEVRSETDYVLHHAQK+LA+F
Sbjct: 2   SKDPSAPPRAATLRLILGDQLNPRHSWFDQCDDQVVYLLMEVRSETDYVLHHAQKVLALF 61

Query: 63  AAMRAFGEQLRAAGHRVRYIRLDDPSNRQSLVDNLDALAAHYQASRVEWQAPDEWRVDQA 122
           AAMR F  +L+A GHRVRYIRLDDPSNRQSLVDNL ALA HYQAS+V+WQAPDEWRVD+A
Sbjct: 62  AAMRDFAARLKAGGHRVRYIRLDDPSNRQSLVDNLSALARHYQASQVQWQAPDEWRVDEA 121

Query: 123 LQQWGDTWAQAHQGQTAVVDSEHFLTARHELPRLFEGRKQWLMEHFYRQMRRRFELLLDA 182
           L+QW    AQA   QT++ DSEHFLT RHELPRLF GRKQWLMEHFYRQMRRRFELLL+A
Sbjct: 122 LRQW----AQAQPLQTSMADSEHFLTDRHELPRLFSGRKQWLMEHFYRQMRRRFELLLEA 177

Query: 183 DGKPEGGQWNFDHDNRKRWPGNPPEPRDWRQPHDHGALWEMLQAQGVRSFGEPQATQLRW 242
           DG P GGQWNFDHDNRKRWPG P EP DWRQPHDH ALWEMLQA  V +FG+PQA+QLRW
Sbjct: 178 DGSPTGGQWNFDHDNRKRWPGTPAEPADWRQPHDHSALWEMLQACAVPTFGDPQASQLRW 237

Query: 243 PLDRTEALQHLDHFITTVLPHFGDYEDAMSSKARRLFHSLLSFALNVKMLHPLEVVRRAE 302
           PL+R EAL HL+HFIT  LP FGD+EDAMSS+A+RLFHSLLSFALNVKMLHPLEVVRRAE
Sbjct: 238 PLNREEALAHLEHFITHALPCFGDFEDAMSSRAQRLFHSLLSFALNVKMLHPLEVVRRAE 297

Query: 303 EAWREGKAPLAAVEGFIRQIIGWREYVRGIYWSQMPGYDERNALAHRLPLPAWFWTGQTR 362
           EA+REG+APLAAVEGF+RQIIGWREYVRGIYWSQMPGY++RN L H LPLPAWFWTGQTR
Sbjct: 298 EAYREGQAPLAAVEGFVRQIIGWREYVRGIYWSQMPGYEDRNVLDHGLPLPAWFWTGQTR 357

Query: 363 MNCLRHAIGQSLETAHAHHIQRLMVIGNFALLAGLDPKELHHWYLGIYIDAFEWVELPNT 422
           M CL+ AIGQSL++AHAHHIQRLMVIGNFALLAGLDPK LH WYLG+YIDAFEWVELPNT
Sbjct: 358 MRCLQQAIGQSLQSAHAHHIQRLMVIGNFALLAGLDPKALHQWYLGVYIDAFEWVELPNT 417

Query: 423 LGMSQWADGGIIATKPYVSSAAYIGRMSDYCQGCAYDPKQKTSADACPFNALYWDFFLRH 482
           LGMSQWADGGIIATKPYVSSAAYIGRMSDYCQGCAYDP+Q+ S DACP+NALYWDFFLRH
Sbjct: 418 LGMSQWADGGIIATKPYVSSAAYIGRMSDYCQGCAYDPRQRHSEDACPYNALYWDFFLRH 477

Query: 483 QSTFGNNPRMGMAYQQIKKMQPDDVQALQQRADDLRSQLDTL 524
           Q  FG N RMGMAYQQ++KM   ++  L++RA  LR +LD L
Sbjct: 478 QERFGKNARMGMAYQQLRKMDTQELARLRERAAHLRERLDQL 519


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,824,698
Number of extensions: 80374
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 434
Effective length of database: 1,193,720
Effective search space: 518074480
Effective search space used: 518074480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)