BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0211.p (670 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 868 0.0 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 209 6e-55 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 165 1e-41 gi|300313022|ref|YP_003777114.1| two component sensor histidine ... 162 1e-40 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 161 2e-40 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/642 (68%), Positives = 515/642 (80%), Gaps = 1/642 (0%) Query: 4 STPAPGSPPAPPRIRKSAVTLGALLLGLLAATVIISGSLLYRASLNDWRNDLATLSTVLA 63 + P P PR+R SA+T+GALLL LL TVI+SG+LLYRASLNDWRNDL+TLSTVLA Sbjct: 2 NEPLPNDQRKTPRMRISALTVGALLLILLTVTVIVSGTLLYRASLNDWRNDLSTLSTVLA 61 Query: 64 ESTAQTISSARLVLDSIQSDIEAANVSDDAQLREHVSTPEYSRTMREKIRGLPFISGIGI 123 E+TAQT+SSARLV+DSIQ+DIE AN +D QL+ HV + E+S+ MREKIRGLPFISGIG+ Sbjct: 62 ENTAQTMSSARLVIDSIQADIEQANPTDQQQLQRHVGSVEFSQIMREKIRGLPFISGIGV 121 Query: 124 SNAQGRIISLSRVFPPPPLDLTDRDYFFHHSQNASTDDFLSETVNSRAAGVPTFYLTRRI 183 +NA+GRI++LSRV+P PP+DLTDRDY+ HH + ST DF+ ETV SRA GVPTFY++RR+ Sbjct: 122 ANAEGRILALSRVYPAPPIDLTDRDYYLHHRSSDSTADFVGETVLSRAGGVPTFYVSRRV 181 Query: 184 NDRQGRMLAIVVVALPCGFFEDFFSAVTKDKPFSILLAREDEKPLIATSLVHDTTVRRDI 243 NDRQGR+LAI+V+ LPC FFE FF VT+DKPFSI+LAR+D K L +T L+ + RR I Sbjct: 182 NDRQGRLLAIIVIGLPCAFFETFFDNVTRDKPFSIVLARKDGKTLTSTDLLPEQGQRRSI 241 Query: 244 KPLADLHLPRPPGTDAKQPYYFMQAHWLGIHRPVRNAPMYLEIGVTDKVYFSEWLESMYP 303 PLA LH P + +Q + FMQ+HWLGIHRPVRN PMYLEIGVTD+VYF EW+ESMYP Sbjct: 242 TPLAQLHPSMPADDEGRQSHVFMQSHWLGIHRPVRNWPMYLEIGVTDEVYFGEWMESMYP 301 Query: 304 LMLVAAISLVGLIGGFGVALRQVQRREQDAQLALELKEAADHANEAKSRFLAMVSHEIRT 363 LMLVAAISLVGLIGGF + RQV+RRE+DA LA LKE ADHANEAKS FLAMVSHEIRT Sbjct: 302 LMLVAAISLVGLIGGFVLTWRQVRRREEDALLATRLKEEADHANEAKSHFLAMVSHEIRT 361 Query: 364 PMNGILGLSELLMESGLSSKQQHYADSIHNATGGLVRIINDILDFSKIESGKLDLEGVAF 423 PMNGILGLSELLMESGLSSKQ+ YADSIH ATGGLVRIINDILDFSKIESGKLDLE VAF Sbjct: 362 PMNGILGLSELLMESGLSSKQRDYADSIHGATGGLVRIINDILDFSKIESGKLDLEMVAF 421 Query: 424 HPARLVREVAELYRPSIHNKDVQLDVRIDCDDALCLVGDPSRLKQVLGNLLSNAIKFTQA 483 HP RLV+E+++LYRPS+ KDVQ D+ +DC + L +VGDP+RLKQVLGNLLSNAIKFTQA Sbjct: 422 HPVRLVQELSDLYRPSLQRKDVQFDLHLDCPENLSVVGDPARLKQVLGNLLSNAIKFTQA 481 Query: 484 GYVRLSMSAQHEEESPERWRLFFAIADSGIGIAPEALAQLFQPFTQADTSISRRFGGTGL 543 G+V+LSMSA+ +E P RWRLFFAI D+GIGI+PEAL QLF+PF QAD+SISRRFGGTGL Sbjct: 482 GHVQLSMSARQDESGPSRWRLFFAITDTGIGISPEALQQLFRPFAQADSSISRRFGGTGL 541 Query: 544 GLAISKNLVELMGGKIACQSVPGQSTKFSFDILCPEGVAAARPDAAPKTEMKNKASLAPE 603 GLAISKNLVELMGG IACQS+PG+ST+FSF+ILCPE A P+ + A+ Sbjct: 542 GLAISKNLVELMGGTIACQSIPGESTRFSFEILCPEASTPA-PEPVSEAAAPAPATALAT 600 Query: 604 APASAASFPPAPPAQMPPLSALTPPPAXKSTASCCASCWRAA 645 + AP MPP +A PP ++A+ S A Sbjct: 601 TAPALPPAAEAPGTLMPPDNAPQPPSNVDASATVLPSLLAGA 642 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 209 bits (532), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 112/256 (43%), Positives = 164/256 (64%), Gaps = 2/256 (0%) Query: 323 LRQVQRREQDAQLALELKEAADHANEAKSRFLAMVSHEIRTPMNGILGLSELLMESGLSS 382 LR ++ + A+ ++ KEAADHA + FL+ +SHEIRTPMN +LG++ LL + L + Sbjct: 60 LRLLRENARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTRLDT 119 Query: 383 KQQHYADSIHNATGGLVRIINDILDFSKIESGKLDLEGVAFHPARLVREVAELYRPSIHN 442 +Q +A +I ++ L+ I+ND+LDFSKI+ GK+D+ V F A++V AE Sbjct: 120 QQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEASAEALSFKARE 179 Query: 443 KDVQLDVRIDCDDALCLVGDPSRLKQVLGNLLSNAIKFTQAGYVRLSMSAQHEEESPERW 502 K V+L +D LVGDP R++Q+L NLL NA+KFT AG V L + A + + + Sbjct: 180 KRVRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKFTHAGEVLLRVQAL--QVTSDHC 237 Query: 503 RLFFAIADSGIGIAPEALAQLFQPFTQADTSISRRFGGTGLGLAISKNLVELMGGKIACQ 562 R+ F + DSGIG+ + L +LF PF QAD+S++R++GGTGLGL+I K LVELMGG I + Sbjct: 238 RVRFEVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVE 297 Query: 563 SVPGQSTKFSFDILCP 578 S G + F F++ P Sbjct: 298 SALGTGSCFWFELGIP 313 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 165 bits (417), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 145/234 (61%), Gaps = 3/234 (1%) Query: 343 ADHANEAKSRFLAMVSHEIRTPMNGILGLSELLMESGLSSKQQHYADSIHNATGGLVRII 402 A+ AN AKS FLA VSHEIRTPMNG+LG+ +LL + QQ Y D + L+ ++ Sbjct: 890 AEQANSAKSLFLASVSHEIRTPMNGVLGMIQLLQRTQPLPAQQDYLDKAEISAKSLLNLL 949 Query: 403 NDILDFSKIESGKLDLEGVAFHPARLVREVAELYRPSIHNKDVQLDVRIDCDDALCLVGD 462 ND+LDFSK+++ +L L+ AF R +A + S V L + +D LVGD Sbjct: 950 NDLLDFSKMDAKQLQLDLQAFELERFGHNLAAVLAGSPPQAGVSLHIALDPQLPRRLVGD 1009 Query: 463 PSRLKQVLGNLLSNAIKFTQAGYVRLSMSAQHEEESPERW-RLFFAIADSGIGIAPEALA 521 RL+QVL NL NA+KFT G++ + + + P R L ++D+GIGIA + L Sbjct: 1010 AHRLQQVLVNLTGNALKFTHQGHIDVHFT--RLDPLPGRTVALRVEVSDTGIGIAADRLD 1067 Query: 522 QLFQPFTQADTSISRRFGGTGLGLAISKNLVELMGGKIACQSVPGQSTKFSFDI 575 +F FTQA+ S +RR+GGTGLGLAISK+LV LMGG++ S PG+ ++F FD+ Sbjct: 1068 DIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSSEPGRGSRFWFDL 1121 >gi|300313022|ref|YP_003777114.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 556 Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 144/466 (30%), Positives = 227/466 (48%), Gaps = 41/466 (8%) Query: 123 ISNAQGRIISLSRVFPPPPLDLTDRDYFFHHSQNASTDDFLSETVNSRAAGVPTFYLTRR 182 I +AQG ++ S+ P P++L DR++ H Q F+S+ V R + + +TRR Sbjct: 113 IVDAQGDVVLSSK--PFTPVNLADREHVQVHMQGGQDQLFISKPVLGRVSKKWSLQITRR 170 Query: 183 INDRQGRMLAIVVVALPCGFFEDFFSAVTKDKPFSILLAREDEKPLIATSLVHDTTVRR- 241 IN G +VVV++ +F + + I L D + + D + Sbjct: 171 INRPDGGFGGVVVVSMDPQYFTRLYHQIDVGHHGVITLVGADGVARVRRTGDMDAMGEQV 230 Query: 242 -DIKPLADLHLPRPPGT-------DAKQPYYFMQAHWLGIHRPVRNAPMYLEIGVTDKVY 293 K A + L + GT D ++ Y Q +R+ P++ +G+ K Sbjct: 231 AGGKVYAAM-LAQGSGTIEAVSKIDGRERLYAFQ--------KLRDYPLFAAVGIDLKER 281 Query: 294 FSEWL-ESMYPLMLVAAISLVGLIGGFGVALRQVQRREQDAQLALELKEAADHANEAKSR 352 + + E LML A +S+ L+ F L + A + + A AN+AKSR Sbjct: 282 LAPYYRERERTLMLAALLSVAVLV--FNAVLLWL------AGSLVRSRREALQANQAKSR 333 Query: 353 FLAMVSHEIRTPMNGILGLSELLMESGLSSKQQHYADSIHNATGGLVRIINDILDFSKIE 412 FL+ +SHE RTP+NG+LG S+ L E S YA +IH++ L+ ++N IL+ +++E Sbjct: 334 FLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYAVAIHDSGNRLLDLVNAILEVTELE 393 Query: 413 SGKLDLEGVAFHPA---RLVREVAELYRPSIHNKDVQLDVRIDCDDALCLVGDPSRLKQV 469 ++ V PA LV + + P K + L+ RI D LV D ++++V Sbjct: 394 DRRV---AVHLDPANIRELVGQAIARHYPQAQAKGLPLECRIGEDVPQILVCDERKIQRV 450 Query: 470 LGNLLSNAIKFTQAGYVRLSMSAQHEEESPERWRLFFAIADSGIGIAPEALAQLFQPFTQ 529 L NL+SNA+++T G V + + E P+ +L I D+GIGIA +F+ FTQ Sbjct: 451 LDNLISNAVRYTDHGRVMVEV----ERSGPQ--QLTMRIKDTGIGIAASQQNDIFEKFTQ 504 Query: 530 ADTSISRRFGGTGLGLAISKNLVELMGGKIACQSVPGQSTKFSFDI 575 AD S R G GLGL I++ LV LMGG++ QS Q + FSF + Sbjct: 505 ADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFSFTL 550 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 94/236 (39%), Positives = 142/236 (60%), Gaps = 11/236 (4%) Query: 344 DHANEAKSRFLAMVSHEIRTPMNGILGLSELLMES---GLSSKQQHYADSIHNATGGLVR 400 + AN+ KS FLA +SHE+RTP+N L L++LL ++ LS +Q +A +I +A L+ Sbjct: 469 ERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTISSAGNDLLA 528 Query: 401 IINDILDFSKIESGKLDLEGVAFHPARLVREVAELYRPSIHNKDVQLDVRIDCDDALCLV 460 +INDILD SK+E+GKLD+ +F +L E++ + + K + V ++ + Sbjct: 529 LINDILDLSKMEAGKLDIVPESFPLTKLADELSASFAITAQQKGLGFKVEVEPGVPQRME 588 Query: 461 GDPSRLKQVLGNLLSNAIKFTQAGYVRLSMSAQHEEESPER-WRLFFAIADSGIGIAPEA 519 D RL Q+L NLLSNAIKFT+ G V L + P+ R+ FA+ D+GIGI + Sbjct: 589 TDIQRLGQILKNLLSNAIKFTEKGEVSLRI-------YPDAGGRIAFAVRDTGIGIGEDQ 641 Query: 520 LAQLFQPFTQADTSISRRFGGTGLGLAISKNLVELMGGKIACQSVPGQSTKFSFDI 575 +F+ F QAD S R++GGTGLGL+IS++L L+GG I S G+ + F+ + Sbjct: 642 HQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIRVTSRLGEGSIFTLSL 697 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,776,583 Number of extensions: 71275 Number of successful extensions: 403 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 353 Number of HSP's successfully gapped: 42 Length of query: 670 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 578 Effective length of database: 1,184,250 Effective search space: 684496500 Effective search space used: 684496500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)