BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0210.p
         (90 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729...   164   2e-42
gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin...    83   4e-18
gi|300312677|ref|YP_003776769.1| two component hybrid sensor his...    73   4e-15
gi|300313896|ref|YP_003777988.1| two component transcription res...    64   3e-12
gi|300313029|ref|YP_003777121.1| two component hybrid sensor his...    63   5e-12

>gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729
           [Herbaspirillum seropedicae SmR1]
          Length = 765

 Score =  164 bits (414), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/89 (85%), Positives = 81/89 (91%)

Query: 2   ALDALRSASYDLVLMDCMMPIMDGYQATAEIRAFEQANGRPRTPIIALTASAIEGDRQRC 61
           A++A+R+  YDLVLMDCMMPIMDGYQATAEIRA E A G PRTPIIALTASAIEGDRQRC
Sbjct: 677 AVEAIRTGHYDLVLMDCMMPIMDGYQATAEIRAHEAARGLPRTPIIALTASAIEGDRQRC 736

Query: 62  LDAGMDDYLSKPFTQVGLMNAVEKWLQKA 90
           LDAGMDDYLSKPFTQVGLM  VEKWLQK+
Sbjct: 737 LDAGMDDYLSKPFTQVGLMQTVEKWLQKS 765


>gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 723

 Score = 83.2 bits (204), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 2/86 (2%)

Query: 2   ALDALRSASYDLVLMDCMMPIMDGYQATAEIRAFEQANGRPRTPIIALTASAIEGDRQRC 61
           AL+ L    Y LVLMDC MP++DGY+ T  IR  +       T I+A+TA+A+ GDR+RC
Sbjct: 511 ALERLARHRYALVLMDCQMPLLDGYETTRRIRRMQ--GELAHTTIVAMTANAMAGDRERC 568

Query: 62  LDAGMDDYLSKPFTQVGLMNAVEKWL 87
           L+AGMDDYL+KP  +  L   +  +L
Sbjct: 569 LEAGMDDYLTKPLLRSQLSAMLAHYL 594


>gi|300312677|ref|YP_003776769.1| two component hybrid sensor
            histidine kinase/response regulator protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1160

 Score = 73.2 bits (178), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 9    ASYDLVLMDCMMPIMDGYQATAEIRAFEQANGRPRTPIIALTASAIEGDRQRCLDAGMDD 68
            A  DLVLMD MMP MDG  A  EIR  +QA  + R PIIALTA A++ D+++CL AG +D
Sbjct: 1083 APIDLVLMDIMMPEMDGLTAMREIR--KQAVWK-RLPIIALTAKAMKDDQEKCLAAGAND 1139

Query: 69   YLSKPFTQVGLMNAVEKWLQK 89
            Y++KP     L++ V  W+ K
Sbjct: 1140 YIAKPLDVEKLLSLVRVWMPK 1160


>gi|300313896|ref|YP_003777988.1| two component transcription
           response regulator protein [Herbaspirillum seropedicae
           SmR1]
          Length = 244

 Score = 63.5 bits (153), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 7/89 (7%)

Query: 2   ALDALRSASYDLVLMDCMMPIMDGYQATAEIRAFEQANGRPRTPIIALTASAIEGDRQRC 61
           ALDA+R+   DL+L+D M+P MDG++   ++R F         P++ LTA A E DR R 
Sbjct: 51  ALDAVRAQRPDLILLDIMLPGMDGWEICRQLRTFSD------VPVLMLTARAEEEDRLRG 104

Query: 62  LDAGMDDYLSK-PFTQVGLMNAVEKWLQK 89
           L+ G DDY+ K PF+   ++  V+  L++
Sbjct: 105 LELGADDYIGKTPFSPREIVARVKSMLRR 133


>gi|300313029|ref|YP_003777121.1| two component hybrid sensor
            histidine kinase/response regulator protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1524

 Score = 62.8 bits (151), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 10   SYDLVLMDCMMPIMDGYQATAEIRAFEQANGRPRTPIIALTASAIEGDRQRCLDAGMDDY 69
             +DLVLMD  MP MDG +AT  IR   +  G    PI+A+TA+A   D+QRC++AGM  +
Sbjct: 1217 HFDLVLMDLQMPGMDGIEATRRIRGQYELRG---LPILAMTANASPEDKQRCIEAGMAGH 1273

Query: 70   LSKPF 74
            ++KP 
Sbjct: 1274 IAKPI 1278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 281,660
Number of extensions: 9953
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 10
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 10
Length of query: 90
Length of database: 1,619,870
Length adjustment: 60
Effective length of query: 30
Effective length of database: 1,335,770
Effective search space: 40073100
Effective search space used: 40073100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)