BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0209.p (176 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 229 1e-61 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 136 8e-34 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 94 4e-21 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 88 5e-19 gi|300311983|ref|YP_003776075.1| methyl-accepting chemotaxis II ... 81 5e-17 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 229 bits (583), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 108/147 (73%), Positives = 129/147 (87%) Query: 1 MKWFYDLKIANKLNAAFLVVLAFIIALGGFSIAQLAGVNKAASEVSSNWLPSINALSRIS 60 M WFY+LKIA+KLNAAFLVVL FII LGGFS +LA VNK++++++ NWLPSI+ALS++S Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 LALARSRSFDMQQLLTDDKKEELASRERADKQMAILAKEMAQYGTLVSEPREKELYPEMQ 120 LALARSRSFDMQQLLT DK+EE ASRERADKQMA L KE+A+YG LVSEPREKELYPE++ Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 121 RNIAAYQEAHVRIMKLFEEGEKQAGHA 147 RNIA Y+EAH R+ LFE+ +KQA HA Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHA 147 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 136 bits (343), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 67/143 (46%), Positives = 94/143 (65%) Query: 1 MKWFYDLKIANKLNAAFLVVLAFIIALGGFSIAQLAGVNKAASEVSSNWLPSINALSRIS 60 MKWFYDL+I+ KL FLVV+A + ALG FSI QL VN A++E+S+NWLPSI L+R+ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 LALARSRSFDMQQLLTDDKKEELASRERADKQMAILAKEMAQYGTLVSEPREKELYPEMQ 120 LA++R RSF++Q +L D KE QM L A+Y T +SEP EK +YPE++ Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 121 RNIAAYQEAHVRIMKLFEEGEKQ 143 + IA + H +I+ L +G+ + Sbjct: 121 KLIATFVSEHDKIIALSRQGKDE 143 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 94.4 bits (233), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 60/145 (41%), Positives = 82/145 (56%), Gaps = 7/145 (4%) Query: 1 MKWFYDLKIANKLNAAFLVVLAFIIALGGFSIAQLAGVNKAASEVSSNWLPSINALSRIS 60 M WFY+ +IA KL AF VL LG FSI QL VN+AA+E+++NWLPSI +L+ + Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 61 LALARSRSFDMQQLLTD-DKKEELASRERADKQMAILAKEMAQYGTLVSEPREKELYPEM 119 +AL+R R+ Q L D D+K+ A +K + LA+ QY +SEP EK L+P + Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 120 QRNIAAYQEAH------VRIMKLFE 138 I + H VR KL E Sbjct: 121 NARIDKFIALHGDTLAAVRAGKLDE 145 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 87.8 bits (216), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 82/147 (55%) Query: 1 MKWFYDLKIANKLNAAFLVVLAFIIALGGFSIAQLAGVNKAASEVSSNWLPSINALSRIS 60 M WF +LKIA KL +F V+ + LG F+I +L VN+A++++++NWLP+I A I Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 LALARSRSFDMQQLLTDDKKEELASRERADKQMAILAKEMAQYGTLVSEPREKELYPEMQ 120 +L R R ++Q + E + + ++ ILAK+ A Y +SE EK LY + Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 121 RNIAAYQEAHVRIMKLFEEGEKQAGHA 147 ++ A Y E + ++ EG+++ A Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARA 147 >gi|300311983|ref|YP_003776075.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] Length = 537 Score = 81.3 bits (199), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Query: 1 MKWFYDLKIANKLNAAFLVVLAFIIALGGFSIAQLAGVNKAASEVSSNWLPSINALSRIS 60 MK F DL+I+ KL +F ++L G FS+ QL+ VN++A+E+++NWLPSI L + Sbjct: 1 MKKFRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVK 60 Query: 61 LALARSRSFDMQQLL-TDDKKEELASRERADKQMAILAKEMAQYGTLVSEPREKELYPEM 119 L LAR RS + Q +L D + R D + L + Y + +SEP EK LYP+ Sbjct: 61 LLLARLRSNESQLILYAADPGLTKTLQARTDDVLKDLEAALDTYRSQISEPEEKALYPQA 120 Query: 120 QRNIAAYQEAHVRIMK 135 + + + H +M Sbjct: 121 SQRLEQLLKEHGALMN 136 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.130 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 400,191 Number of extensions: 10558 Number of successful extensions: 70 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 68 Number of HSP's successfully gapped: 9 Length of query: 176 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 97 Effective length of database: 1,245,805 Effective search space: 120843085 Effective search space used: 120843085 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)