BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0208.p (394 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 555 e-159 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 431 e-122 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 426 e-120 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 421 e-119 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 416 e-117 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 555 bits (1430), Expect = e-159, Method: Compositional matrix adjust. Identities = 316/395 (80%), Positives = 337/395 (85%), Gaps = 15/395 (3%) Query: 1 MAIIGLVGSCIALAMLLSWWIARLVSRPLIQAVSIARQVAEGDLTARIPDNTGRDETAQL 60 MAI+ LV +C+ LAM LSWWIARLV+RPL AV IARQVA GDLTA IP RDET QL Sbjct: 191 MAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIP-TAHRDETGQL 249 Query: 61 MAALKQMNDNLLNIVQEVRTGTDTISTASAEIATGNMDLSSRTEQQAGALEETASAMEEL 120 + AL+QMN NLLNIV+EVR GTDTI+TASAEIATGNMDLSSRTEQQAGALEETASAMEEL Sbjct: 250 LEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALEETASAMEEL 309 Query: 121 TSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMDAINESSRKIADIISVIDGIA 180 TSTVRQNSDNARQANQLAV+ASEVAQAGG VVGKVV TM AIN+SSRKI DII VIDGIA Sbjct: 310 TSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVDIIGVIDGIA 369 Query: 181 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAHEIKALIDDSVAKVDTGT 240 FQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAHEIKALIDDSVAKVDTG+ Sbjct: 370 FQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDDSVAKVDTGS 429 Query: 241 KLVGEAGQTMNEVVASVKRVSDIVAEITAAGAEQSQGIEQINNAVVQMDENTQQNAALVE 300 KLV EAGQTMNEVVASVKRVSDIVAEITAAGAEQ+QGIEQINNAVVQMDENTQQNAALVE Sbjct: 430 KLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDENTQQNAALVE 489 Query: 301 QAAAAAKALQEQATRLSQTVGVFRLDASDVPATVHAKHAKAAMATAAARDITPARPAVAA 360 QAAAAAKALQEQA RLS+TV VFRLDA VP V ++AA RDITPARPA+A Sbjct: 490 QAAAAAKALQEQAGRLSETVSVFRLDAQHVPVVV----SRAAATAQPERDITPARPALAQ 545 Query: 361 PRTPSIARSAPAARPATPAKSQHD-SADNGDWEQF 394 R+ +AR PA S SA+ GDWEQF Sbjct: 546 SRSKVMAR---------PAHSNTSASAEQGDWEQF 571 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 431 bits (1107), Expect = e-122, Method: Compositional matrix adjust. Identities = 258/396 (65%), Positives = 308/396 (77%), Gaps = 9/396 (2%) Query: 1 MAIIGLVGSCIALAMLLSWWIARLVSRPLIQAVSIARQVAEGDLTARIPDNTGRDETAQL 60 + II V +CI LAMLL+ W++RL++RPL +AVS+A++VA GDLT RI + G+DET QL Sbjct: 191 LWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRI-EPAGKDETGQL 249 Query: 61 MAALKQMNDNLLNIVQEVRTGTDTISTASAEIATGNMDLSSRTEQQAGALEETASAMEEL 120 + ALK MND+L+ IV +VR GT TI+TAS EIA+GN+DLSSRTE+QA +LEETASAMEEL Sbjct: 250 LVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLEETASAMEEL 309 Query: 121 TSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMDAINESSRKIADIISVIDGIA 180 TSTV+QN+DNARQANQLAVSASEVA GG VV +VV TM +IN SSRKIADII VIDGIA Sbjct: 310 TSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIADIIGVIDGIA 369 Query: 181 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAHEIKALIDDSVAKVDTGT 240 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AA EIK LI+ SVA+VD G+ Sbjct: 370 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEGSVAQVDMGS 429 Query: 241 KLVGEAGQTMNEVVASVKRVSDIVAEITAAGAEQSQGIEQINNAVVQMDENTQQNAALVE 300 KLV AG TM+EVV SV+RV+DIV EI++A EQS+GIEQ+N A+ QMDE TQQNAALVE Sbjct: 430 KLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEVTQQNAALVE 489 Query: 301 QAAAAAKALQEQATRLSQTVGVFRLDAS-DVPATVHAKHAKAAMATAAARDITPARPAVA 359 +AAAAA++LQEQA L+QTVG F+L+ D PA+ A + TAA R RPA Sbjct: 490 EAAAAAQSLQEQAETLTQTVGFFKLEQQPDEPASRPPVRAASVARTAAVRHAPATRPAAT 549 Query: 360 APRTPSIARSAPAAR-PATPAKSQHDSADNGDWEQF 394 + + A+ A +R P A+ D G WEQF Sbjct: 550 LAASAAPAKPASGSRLPGGAAE------DGGSWEQF 579 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 426 bits (1095), Expect = e-120, Method: Compositional matrix adjust. Identities = 229/321 (71%), Positives = 277/321 (86%), Gaps = 3/321 (0%) Query: 14 AMLLSWWIARLVSRPLIQAVSIARQVAEGDLTARIPDNTGRDETAQLMAALKQMNDNLLN 73 A++L + +AR + +PL +AV +A VA GDLT RI ++ RDET QLM AL++MNDNL+ Sbjct: 206 AIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHS-RDETGQLMQALRKMNDNLIE 264 Query: 74 IVQEVRTGTDTISTASAEIATGNMDLSSRTEQQAGALEETASAMEELTSTVRQNSDNARQ 133 IV VR GT++I+TAS EIA+GN+DLS+RTEQQAG+LEETASAMEE+TSTVRQN+DNARQ Sbjct: 265 IVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQNADNARQ 324 Query: 134 ANQLAVSASEVAQAGGQVVGKVVHTMDAINESSRKIADIISVIDGIAFQTNILALNAAVE 193 ANQ+AVSASE+A GGQ+VG+VVHTMD IN+SSRKI DII VIDGIAFQTNILALNAAVE Sbjct: 325 ANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNILALNAAVE 384 Query: 194 AARAGEQGRGFAVVASEVRSLAQRSASAAHEIKALIDDSVAKVDTGTKLVGEAGQTMNEV 253 AARAGEQGRGFAVVA+EVRSLAQRSA+AA EIKALI DSV KV+ G+ LV +AG TM +V Sbjct: 385 AARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQAGATMEQV 444 Query: 254 VASVKRVSDIVAEITAAGAEQSQGIEQINNAVVQMDENTQQNAALVEQAAAAAKALQEQA 313 V+SV+ V+DIVAEI+AA AEQS GIE+IN AV QMDE TQQNAALVEQAAAAAK++QEQA Sbjct: 445 VSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQA 504 Query: 314 TRLSQTVGVFRLD--ASDVPA 332 RL+Q++ +F+L+ A+ +PA Sbjct: 505 VRLTQSISIFKLEQGAASIPA 525 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 421 bits (1082), Expect = e-119, Method: Compositional matrix adjust. Identities = 257/391 (65%), Positives = 300/391 (76%), Gaps = 12/391 (3%) Query: 6 LVGSCIALAMLLSWWIARLVSRPLIQAVSIARQVAEGDLTARIPDNTGRDETAQLMAALK 65 L G + L+ L + I R ++RPL +AV +A VA GDLT +I + T +DET L+ ALK Sbjct: 196 LSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQI-EATSKDETGALLGALK 254 Query: 66 QMNDNLLNIVQEVRTGTDTISTASAEIATGNMDLSSRTEQQAGALEETASAMEELTSTVR 125 MNDNL IV EVR GTDTI+TAS EIATGN+DLSSRTEQQAGALEETASAMEELTSTVR Sbjct: 255 SMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEETASAMEELTSTVR 314 Query: 126 QNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMDAINESSRKIADIISVIDGIAFQTNI 185 QN+DNARQAN LA +AS+VA GG VVG+VV TM IN++SRKI DIISVIDGIAFQTNI Sbjct: 315 QNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDIISVIDGIAFQTNI 374 Query: 186 LALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAHEIKALIDDSVAKVDTGTKLVGE 245 LALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AA EIK+LID SV +V++G++LVG+ Sbjct: 375 LALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDASVERVESGSRLVGQ 434 Query: 246 AGQTMNEVVASVKRVSDIVAEITAAGAEQSQGIEQINNAVVQMDENTQQNAALVEQAAAA 305 AG TM EVVASVKRV+D+VAEITAA EQS GIEQIN A+VQMDE TQQNAALVEQAAAA Sbjct: 435 AGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQNAALVEQAAAA 494 Query: 306 AKALQEQATRLSQTVGVFRLDASDVPATVHAKHAKAAMATAAARD--ITPARPAVAAPRT 363 A++LQEQ+ RLS TVG+FRL +D HA H + ++ R + PARP +A R Sbjct: 495 AQSLQEQSGRLSDTVGIFRL-GND-----HA-HQPSPLSAPVQRSVQVAPARPVLA--RK 545 Query: 364 PSIARSAPAARPATPAKSQHDSADNGDWEQF 394 P SAPA + +G WEQF Sbjct: 546 PVTRTSAPAKSIPAAQPVAQAALADGQWEQF 576 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 416 bits (1069), Expect = e-117, Method: Compositional matrix adjust. Identities = 242/400 (60%), Positives = 303/400 (75%), Gaps = 17/400 (4%) Query: 3 IIGLVGSCIALAMLLSWWIARLVSRPLIQAVSIARQVAEGDLTARIPDNTGRDETAQLMA 62 +IG + LA+LL+WW+A ++RPL AV +AR+VA GDLTARI + RDET L+ Sbjct: 195 LIGGGAIALMLAVLLAWWLANNITRPLALAVQLARRVASGDLTARI-EVRSRDETGALLG 253 Query: 63 ALKQMNDNLLNIVQEVRTGTDTISTASAEIATGNMDLSSRTEQQAGALEETASAMEELTS 122 ALK MN++L+ IV VR GT+ I+TAS+EIATGN+DLSSRTEQQA +LEETAS+MEELTS Sbjct: 254 ALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASSLEETASSMEELTS 313 Query: 123 TVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMDAINESSRKIADIISVIDGIAFQ 182 TV+QN+ NAR+AN++A +AS++A +GG VV +VV TM+ IN+SSRKI DIISVIDGIAFQ Sbjct: 314 TVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKIVDIISVIDGIAFQ 373 Query: 183 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAHEIKALIDDSVAKVDTGTKL 242 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AA EIKALI DSVAKV++G+ L Sbjct: 374 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALISDSVAKVESGSLL 433 Query: 243 VGEAGQTMNEVVASVKRVSDIVAEITAAGAEQSQGIEQINNAVVQMDENTQQNAALVEQA 302 V EAG TM E+V SV+RV++++ EI+AAG EQ GIEQ++ AV QMD+ TQQNAALVEQA Sbjct: 434 VNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEQA 493 Query: 303 AAAAKALQEQATRLSQTVGVFRLDASD--------VPATVHAKHAKAAMATAAARDITPA 354 AAA+++LQEQA L+Q V VFRL+A PA+V A + AT ++R Sbjct: 494 AAASQSLQEQAQELAQAVSVFRLEAGQALEVAPEPAPASVAASRSGVRPATRSSR----- 548 Query: 355 RPAVAAPRTPSIARSAPAARPATPAKSQHDSADNGDWEQF 394 + +P PS + SA PA + S+ SAD +W F Sbjct: 549 ---LPSPVGPSASPSASPMHPAPASGSRLSSADADEWVTF 585 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.311 0.121 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 704,938 Number of extensions: 20519 Number of successful extensions: 479 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 216 Number of HSP's successfully gapped: 71 Length of query: 394 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 307 Effective length of database: 1,207,925 Effective search space: 370832975 Effective search space used: 370832975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)